Enterobacteriaceae endosymbiont of Plateumaris pusilla: GJT83_01710
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Entry
GJT83_01710 CDS
T07640
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eep
Enterobacteriaceae endosymbiont of Plateumaris pusilla
Pathway
eep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GJT83_01710 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eep03021
]
GJT83_01710 (rpoB)
03400 DNA repair and recombination proteins [BR:
eep03400
]
GJT83_01710 (rpoB)
Enzymes [BR:
eep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GJT83_01710 (rpoB)
Transcription machinery [BR:
eep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GJT83_01710 (rpoB)
DNA repair and recombination proteins [BR:
eep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GJT83_01710 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QJC29613
LinkDB
All DBs
Position
complement(359327..363367)
Genome browser
AA seq
1346 aa
AA seq
DB search
MVYSQTEKKRIRKDFGKQSQVLGIPYLLSIQLDSFKNFIKQDLTGKYGLEAAFKSIFPIN
SYSGDCELHYINYRLGKTIFNVKECKIRGMTYSAPLRVTLQLIIYNKELSDTNKKIIKEQ
EVYMGEIPLMTKNGTFIINGIERVVVSQLHRSPGVFFDSDKGKTHTSGKILYNARIIPYR
GSWLDFEFDPKDNIFIRIDRRRKLPVTIILKALGYDIEQILDIFFEKNIYIIKNKKLSMK
LIPDRLRGETALFNIIINDVVYIEKGKRITLKHINNLKKNKIKYINIPKDYLIGKVVSKD
YINKKTGEIIISANSYLELDSINSILENNEYDVIDTIFTNDLDHGPYISETLRIDITNDK
LEALVEIYRMMRPGEPPTKESAELLFKKLFFNIERYDLSSVGRMKFNRSLLRKDIIGSGV
LNKQDIVDVIKKLIDIRNGKGEIDDIDHLGNRRIRSVGEMVENQFRIGLIRVERSVKERL
SLNENNNVMPQDMINAKPISAAIKEFFCSSQLSQFMDQNNPLSEITHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPYRCVNNAYV
TNIIHYLSSIEEGNFIIAQANTKINPLNGLILNDLVTCRNKGESSLFKKEQINYMDVSNQ
QIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLIGTGMERIVAVDSGVTIIA
KNSGIVQYVDASRIIVKINDNKRNIQKKGIDIYHLTKYTRSNQNTCINQIPCIKLNELVE
KGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILLSEKIVQEDRFTTIHIQELSC
ISRDTKLGSEEITSDIPNVSESSLSKLDESGIVYIGAEVTSGDILVGKVTPKGETQLSPE
EKLLRAIFGEKASDVKDTSLRVPNGVSGTVIDVKIFTRDGVKKDKRTLEIEEMELKQIKK
DLLAEQKIFEVNISTRINLFLIENGICNEDILKYSFNYWIKLFSSQNKEKGKRLNNLVKQ
YDELKIKFNKMLNIQKKKITQGDDLAPGILKIVKVNLAVKRQVQPGDKMAGRHGNKGVIS
KICPVEDMPYDNNGYPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINLLLQQQKN
IEEIRCFIQKAYNVGNNIRQNINFNNFSDKEILSLANNLRQGMPIATPVFDGAKESEIKK
LLTLSDLPTSGQITLYDGLIGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ
PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTIKSDDVNGRTKMYKNIVDGNHQMEP
GMPESFNVLLKEIRSLGINIELENKE
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atggtttattctcaaactgaaaaaaaacgtattcgtaaagattttggtaaacaatctcag
gttttaggtattccatatttactttctattcaacttgattcatttaaaaatttcataaaa
caagatcttacgggaaaatatggattagaagctgcttttaaatctatttttccaataaat
agttatagtggtgattgtgaattacattatataaattatcgtttaggtaaaactattttt
aatgttaaagaatgtaaaataagaggtatgacttattctgcacctttgcgtgtaacatta
cagttaattatttataataaagaattgtcagatacaaacaaaaaaattataaaggaacaa
gaagtatatatgggagaaatcccattaatgacaaaaaatggtacttttataattaatggt
attgaaagagtagtagtatctcaattacatcgtagtcctggagtattttttgatagtgat
aaaggaaaaacacatacttcaggaaaaatattatataatgctcgtattattccttataga
ggatcatggttagattttgaatttgatcctaaagataatatttttattcgtattgataga
agaagaaaactaccagttacaataatattaaaagctttaggttatgacatagaacaaatt
ttagatattttttttgaaaaaaatatctatattataaaaaataaaaaattatcaatgaaa
ttgatacctgatagattaagaggagaaacggcattatttaatattataattaatgatgta
gtttatatagaaaaaggaaaacgtattactttaaaacatataaataatttaaaaaaaaat
aaaattaaatacataaatataccaaaagattatcttataggaaaagtagtatccaaagac
tatataaataaaaaaacaggagaaattataatttctgctaattcttatttagaattagat
agcatcaatagtattttagaaaataatgagtatgatgtaattgatacaatatttactaat
gatttagatcatggtccatatatatctgaaacattaagaatagatattactaatgataaa
ttagaagctttagtagaaatatataggatgatgagacctggtgaacctcctactaaagaa
tcagcagaattattatttaaaaaattattctttaatatagaacgttatgatttatcttca
gtagggaggatgaaatttaatcgttctttattacgtaaagatattattggatctggagtt
ttaaataaacaagatattgttgatgtaattaaaaaattaatagatatacgtaatggaaaa
ggagaaatagatgatattgatcacttaggtaatagaagaattagatctgttggagaaatg
gtagaaaatcaatttcgtataggattaattcgtgttgaacgttctgttaaagaacgatta
tcattaaatgagaataataatgtaatgcctcaagatatgattaatgctaaacctatttct
gctgctataaaagaatttttttgttcaagtcaattatctcaatttatggatcaaaataat
ccactatcagaaattacacataaaagacgtatttcagctttaggacctggaggtttaaca
agagaaagagcaggttttgaagttagagatgttcatcctactcattatggtagagtctgt
cctattgaaactccagaaggtcctaatataggtttaattaattcattatcagtttatgct
agaactaatgaatatggttttttagaaacaccttatcgttgtgttaataatgcttatgtt
actaatattattcattatttatcttctatagaagaaggaaattttattattgctcaagct
aatacaaaaattaatccattaaatggattaattttaaatgatttagttacatgtagaaat
aaaggtgaatctagtttatttaaaaaggaacaaattaattatatggatgtttcaaatcaa
caaatagtttctgtaggagcatctttaattccttttttagaacatgatgatgcaaataga
gcattaatgggtgctaatatgcaaagacaagctgtacctactttaagatcagaaaaacct
ttgattggtactggaatggaaagaatagtagctgtagattcaggagtaactattattgca
aaaaattcaggaattgtacaatatgtagatgcatctcgtattattgtaaaaattaatgat
aataaaagaaatatacaaaaaaaaggaattgatatttatcatttaactaaatatacaaga
tctaatcaaaatacatgtattaatcaaataccatgtattaaattaaatgaattagtagaa
aaaggagatgtattagcagatggaccatcaactgatttaggtgaattagcattaggtcaa
aatatgagagtagcatttatgccatggaatggttataattttgaagattctatattactt
tcagaaaaaattgtacaagaagatagatttacaacaatacatatacaagaattatcatgt
atatctcgtgatactaaattagggtctgaagaaattacttcagatattcctaatgttagt
gaatcctctttatctaaattagatgaatcgggaattgtatatattggtgctgaagtaact
agtggtgatattttagttggtaaagtaactcctaaaggagaaactcaattatcaccagaa
gaaaaattattacgtgctatttttggagaaaaagcttctgatgtaaaagatacatcatta
cgtgttcctaatggagtttcaggaactgttattgatgtaaaaatttttacaagagatgga
gtaaaaaaagataaaagaactttagaaattgaagaaatggaattaaaacaaattaaaaaa
gatttacttgctgaacaaaaaatatttgaagtaaatatttctacacgtataaatttattt
ttaatagaaaatggtatttgtaatgaagatatattaaaatattcttttaattattggatt
aaattattttcttctcaaaataaagagaaaggaaaaagattaaataatcttgtaaaacaa
tatgatgaattaaaaataaaatttaataaaatgcttaatatacaaaaaaagaaaataact
caaggagatgatttagctcctggtatactaaaaatagttaaagttaatttagctgttaaa
agacaagtacaaccaggagataaaatggcaggaagacatggtaataaaggagtaatatca
aaaatttgtcctgtagaagatatgccatatgataataatggttatcctgttgatattgta
ttaaatccattaggtgtaccatctagaatgaatataggacaaattttagaaacacattta
ggtatggctgcaaaaggaattggtgataaaataaatttattattacaacaacaaaaaaat
attgaagaaatacgttgttttattcaaaaagcttataatgtaggtaataatattagacaa
aatataaattttaataatttttcagacaaagaaatattatctttagcaaataatttaaga
caaggaatgccaatagcaacgccagtatttgatggagctaaagaaagtgaaataaaaaaa
ttattaacactttctgatttaccaacttcaggacaaattacattatatgatggtctgata
ggtgaaaaatttgaaagacctgtaactgtaggttatatgtatatgttaaaattaaatcat
ttagtagacgataaaatgcatgcaagatctacaggatcatatagtttagttacacaacaa
cctttaggaggtaaagctcaatttggaggacaaagatttggagaaatggaagtatgggct
ttagaagcatatggagcagcatatactttacaagaaatgttaacaattaaatctgatgat
gtaaatggtagaacaaaaatgtataaaaatattgttgatggaaatcaccaaatggaacca
ggaatgccagaatcatttaatgttttgcttaaagaaatacgttcgttaggaataaatatt
gaattagaaaataaagaataa
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