Entomospira entomophila: PVA45_06865
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Entry
PVA45_06865 CDS
T10561
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eet Entomospira entomophila
Pathway
eet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PVA45_06865 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eet03400
]
PVA45_06865 (mfd)
Enzymes [BR:
eet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PVA45_06865 (mfd)
DNA repair and recombination proteins [BR:
eet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PVA45_06865 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WDI35428
LinkDB
All DBs
Position
1434619..1438011
Genome browser
AA seq
1130 aa
AA seq
DB search
MITHNYEAFLKQIHESKDVKSLYDKIASHSDTDPIAITGLKKAWLAFFLKISTFRSPPII
ITPSQQHASHLREDLKLLGVHSLTFDSIQHRIYDPSHSSGDRLSQLSQLFLSQEIVIIPI
RTLMLKVIAPESLLSRVLSLNINQNYDTHSIVEQLVSMGYSRTNRVLIHGEFAVRGEIID
IFPHAKSYPFRLQFDFETLESIKRFDPEDQRSLESIPTLDVPPIYSLPVDDTTSYEEIRQ
KWRSMQHDQALDLSLEEFQQHVDLFALMLDKNQDMDILRYLQQKRPIFLSDFNALETVSD
TFQKEVNALYKEAVRAGQKIPKPESILFSWQDLTEKLFSRAIILKNFTDLKSEHHVITYE
ESRSFFGNINFLKEELQQLHKTGYRIAIFSENEQQALRIETLLGDTSNYVTIFPFEISAG
FTLPQAKVVAICEHEIFGRKRREIKHNTQKIESSVIDSFVDLNPGDHIVHVNYGVGLFKG
IERMNAGGSERDYITLEYFEGDLIFVPIEQVNLVQRYIGSSGEKPRLDKIGGRSWSQKKS
RARKSAEELSGFLVDLYAKREASRGFAFTLEDPMLMSMERDFEAHFPYQETEDQLTVMEE
IKADMQQIKPMDRLVCGDVGYGKTELAMRSAFRAVLCGKQCAVLCPTTILAEQHYENFLK
RFAAFDFINIKLLSRTVDRKTQKKTLEELASGQIDIIIGTHRILSKDLQFRNLGLLIIDE
EQRFGVKDKEKVKNLKADIDCLTLSATPIPRTLHMSLVKIRDLSMLKTPPANRKPVETYV
SEFNADLIAKAIRKELARGGQIFYLHNRVESLESIRQFLCETVPEASIEFAHGKMTGDEM
DEVMHRFINGGFQVLLSTTIIESGIDIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRLA
YAYLFYPEKSALSELAMKRLQIISDFTELGSGFKIAMKDMEVRGAGNLLGPEQSGEIQSV
GFDLYLKLLDEAIRSRIQDEPDIIEPYLELEYSGFIPDSYINSSMEKMEIYKKIAVIETA
EEIESLHAELLDRFGTVPDEVYSLISLAEIRVLCRRLRISSIKERNGWAEVEFSKLQMIN
FAKLMRIIHESHGKLKPSPSNPAAILLETGRIGLKEKSEFIRDRLQQIIA
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
gtgattacacataattacgaggcatttctcaagcagatacacgaaagtaaggacgttaag
tctctttatgacaagatcgcttctcatagtgataccgaccccatcgctattacgggatta
aagaaagcttggttagctttctttctcaaaattagcacctttcgttcaccacctatcatt
atcactcctagccaacaacatgcatcgcatttacgggaagacctcaagctcttaggtgtt
cattcccttacttttgactctatccagcatcgcatttatgatccatctcattcatctgga
gatcgattatcacaactatcgcaactatttttgagtcaagagatcgtgattattccaatc
cgaaccctcatgctcaaggtaattgcgccagagtcgttactttcgcgtgtactctcgcta
aatatcaatcaaaactacgatacccattccattgtagaacaattagtctctatgggatat
agtcgtactaatcgtgtcttaattcatggtgaatttgctgttcgtggtgagattattgat
atctttcctcatgcaaagagctatccttttcgtctacaatttgactttgagacactagag
agcattaagcgttttgatccagaagatcaaagaagtcttgagtctattcctacccttgat
gttcctccaatatactctttacccgtggacgatacgacaagctatgaggaaattcgtcaa
aaatggcgttccatgcaacacgatcaagccctggatctatcactagaagaattccagcaa
catgttgatctctttgccctcatgttagacaaaaatcaagatatggatattctacgctat
ctccagcaaaaacgacctatctttctaagtgacttcaatgctctagagacagtctcggat
accttccaaaaggaggtcaatgcactctacaaagaggcagtgcgtgctgggcaaaaaatt
ccaaaaccagaatccattcttttttcttggcaagacctcacggaaaagctcttttctcgt
gctattatcctcaaaaatttcaccgatctcaagtcagaacaccatgtcatcacctatgaa
gagtcgcgtagtttctttggaaatatcaacttccttaaagaggaattacagcaactccac
aaaactggttatcgcattgctatctttagtgaaaacgagcaacaggctttacggatcgaa
acactcctaggtgatacatcgaattatgttacaatttttccatttgagatcagtgctgga
ttcacactgcctcaagcaaaagttgtggccatttgcgagcatgaaatttttgggcgtaaa
cgtcgagagatcaagcacaatacccaaaaaatcgagagcagtgtcatcgatagctttgtt
gatctcaacccaggagatcacattgtccacgtcaactatggtgttggactcttcaaaggt
attgaacgtatgaatgctggcggtagcgaacgagactacatcacgctagagtattttgag
ggtgatttaattttcgttccgattgagcaagtcaaccttgttcagcgctatattggttca
tctggagaaaagccacgtcttgataaaattggcgggcgatcatggagtcaaaaaaagagc
cgtgcacgtaagagtgccgaagagctctctgggtttcttgtcgatctctatgcaaagcga
gaagcctctagaggctttgcctttaccctagaggatcccatgctcatgagtatggaacga
gactttgaggcacactttccttatcaggagaccgaagatcaactcactgttatggaagag
attaaagcagatatgcaacaaatcaaacccatggatcgcctcgtctgtggagacgttggc
tatggaaagactgaacttgcaatgcgttcggcttttcgtgcagtgctctgtggcaagcag
tgtgcagtgctctgtccgacaacgattcttgccgaacaacattatgaaaattttctcaaa
cgctttgctgcctttgacttcatcaatattaaattactgagtcgtactgtcgatcgtaaa
acccaaaaaaagactctagaagaactagccagcggtcaaattgatattattattggcaca
catcgcattttaagtaaggatcttcaatttagaaatttgggactgctgattatcgacgaa
gaacagcggtttggagtaaaggataaagaaaaagtaaaaaatctcaaagcagatattgat
tgtctcaccttgagtgcaaccccaataccacgaactcttcacatgagtttagtaaaaatt
cgtgatctctccatgttaaaaacgcctccagccaaccgtaaaccagttgaaacctatgtg
agtgaattcaacgccgatttgattgccaaagccattcgtaaagagcttgctcgtggcgga
caaatattctatctgcacaatcgagtggaaagtcttgagagtattcgacaatttctctgc
gagacagttcctgaagcttccatcgaatttgcccatggcaagatgaccggtgatgagatg
gatgaagttatgcatcgcttcatcaatggtggattccaagttctattgagcaccacaatt
atcgaaagtggcattgatattcccaatgtcaatacaatcatcattgatcgtgctgatatg
tatggtgtgagtcaactctatcagttacgagggcgtgttggtcgtagcgatcgactcgcc
tatgcctatctcttttatcctgaaaagtcggctctcagtgagcttgcaatgaagcgtctt
caaattatcagcgacttcacagaacttggatcaggctttaaaattgctatgaaggacatg
gaggtcagaggggctggaaatttacttgggccagaacaatctggagaaattcaatcggta
ggatttgatctctacttaaaacttcttgatgaagccattcgctcacgaattcaagatgaa
ccagatatcattgaaccatatttagagctggaatactctggattcattccagatagctat
atcaatagctcgatggagaaaatggaaatctataaaaaaattgctgtcatcgagactgct
gaggaaattgaaagtctccatgctgaacttctcgatcgttttggcactgttcccgatgaa
gtttacagcttaatctcacttgcagaaattcgtgtactatgtcgccgactacgtattagt
agtatcaaagagcgtaatggctgggcagaggttgaattcagtaaattgcaaatgatcaac
tttgccaaactcatgcgaattatccatgagagtcatggaaagttaaaaccaagtcctagc
aatcccgctgctattttgctggaaactggccgaattggtttaaaagagaagtcagaattc
atccgagatcgcttgcaacaaattattgcttaa
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