Eikenella exigua: EZJ17_00170
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Entry
EZJ17_00170 CDS
T06211
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eex
Eikenella exigua
Pathway
eex03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EZJ17_00170 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eex03021
]
EZJ17_00170 (rpoC)
03400 DNA repair and recombination proteins [BR:
eex03400
]
EZJ17_00170 (rpoC)
Enzymes [BR:
eex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EZJ17_00170 (rpoC)
Transcription machinery [BR:
eex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EZJ17_00170 (rpoC)
DNA repair and recombination proteins [BR:
eex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EZJ17_00170 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
DUF5979
Motif
Other DBs
NCBI-ProteinID:
QED91212
UniProt:
A0AAX1F535
LinkDB
All DBs
Position
30010..34185
Genome browser
AA seq
1391 aa
AA seq
DB search
MNLSNLFNPLQAAGMEEEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIELAAPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTSLQRRQLLTEEDYYAKLEEYGEDFDA
KMGAEGIRELLRSLDVPAEIEILRQELESTSSETKIKKLAKRLKVLEVFQRNGMKLEWMI
MDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELHAPDIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PYLRLHQCGLPKRMALELFKPFIFHKLEVRGEAATVKAAKKLVEQEVPVVWDILDEVIRE
HPIMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDKINGKGEGSLFSDVKEVHRAYY
TKQVELGTKITVRLQEWVKDDQDEFEPITKRYETTVGRALLSEILPKGLPFEYINKALKK
KEISRLINASFRLCGLRDTVIFADHLMYTGFSFAAKGGISICVDDMEVPKEKVKLLAEAN
AEVKEIEDQYRQGLVTNGERYNKVVDIWGRAGDKIAKAMMDNLSKQKVIDREGKEVDQES
FNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTNDGFVMKAVVQGGDVIEALRDR
ILGRVTAQDVVDPSSSATLVEAGTLLNEQLVDLIDRSGVDEVKVRTPITCKTRYGLCAKC
YGRDLARGKLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTA
RFSSQMRYVANNKGELVVIGRSCELVIHDEVGRERERHKVPYGATLLVQDGSAVKAGQTL
ATWDPHTRPMITEYAGRVCFENVEEGVTVTRQTDEITGLSTLVVIDGKRRTSTSKLLRPT
VKLLDGNGEEVTMPGTETPVSMAFPVGAVITVREDQEVGKGDVLARIPQASSKTRDITGG
LPRVAELFEARVPKDAGMLAEVTGTVSFGKETKGKQRLVITDLEGAAHETLISKEKQILV
HDGQVVNRGEIIVDGSVDPHDILRLQGIEALARYIVQEVQEVYRLQGVRISDKHIEVIIR
QMLRRVNIADAGETGFITGEQVERGDVMQANERAVAEGKEPARFDNILLGITKASLSTDS
FISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLTYHRSRRAQWQAHHE
AQVNEQVDEAE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgtcgaacctgtttaacccgctgcaagctgccggcatggaagaagaattcgat
gccattaaaatcggtattgcctcgcccgaaaccatccgctcttggtcttacggtgaagtg
aagaagccggaaaccatcaactaccgtaccttcaaacccgagcgcgacggcttattctgc
gccaaaatcttcggcccggtaaaagactacgaatgcttgtgcggaaaatataagcgattg
aagttcaaaggtgtaacctgcgaaaaatgcggtgtggaagttaccctttctaaagtacgc
cgtgagcgcatggggcatattgagctggccgcgcctgttgcccatatttggttcttgaaa
tcactgccttcccgcctcggcatggtgttggatatgaccttgcgcgatattgagcgcgtg
ctgtatttcgaagcttttgtggtaaccgaccctggcatgacctcgctgcaacgccgccag
ctgctgaccgaggaagactactacgccaagctggaagagtatggcgaagacttcgatgcc
aaaatgggcgccgaaggcatccgcgaactgttgcgctcattggatgtgccagccgaaatc
gaaatcctgcgacaggaattggaaagcaccagctccgaaaccaaaatcaagaagctagct
aaacgactgaaagtgctggaagtcttccagcgcaatggcatgaagctggagtggatgatt
atggacgtgttgcccgtgctgccgcctgatttgcgtccgctggtgccgttggatggcggg
cgtttcgctacttccgatttgaatgacctctatcgccgcgtcatcaaccgcaacaaccgc
ctcaaacgcctactggagctgcatgcgcccgacatcatcgtgcgcaacgaaaaacgcatg
ctgcaggaagcggtggacagcctgttggataatggccgtcgcggcaaggccatgaccggc
gccaacaaacgcccgctcaaatcgctagctgacatgattaaaggcaaaggcggccgcttc
cgccaaaacctgttgggcaagcgcgtagactactccggccgttctgtgattaccgtcggc
ccctatctgcgcctgcaccagtgcggcctgcccaaacgcatggccttggagctattcaaa
ccattcatcttccacaaactggaagtgcgcggcgaggcggctaccgtgaaagctgccaaa
aaactggtggagcaggaagtgccagtggtgtgggatattttggacgaagtcatccgtgag
cacccgattatgctcaaccgtgccccgactctgcaccgcttgggaattcaggcttttgag
ccaattttgattgaaggcaaggctatccagctgcatcccttggtgtgcgccgcgttcaac
gctgacttcgatggcgaccaaatggccgtacacgttcccttgagcctggaagcacaaatg
gaagcccgcactctgatgctggcctccaacaacgtgctctctcccgctaatggcgagccg
attatcgtgccgtctcaagatattgtgttgggtctatactacatgactcgcgacaaaatc
aatggtaaaggcgaaggtagcctgttttccgacgtgaaagaagtgcaccgcgcttactac
accaagcaggtggaattgggcaccaaaattaccgtgcgcctgcaggaatgggtgaaagac
gaccaagacgagttcgagccgattaccaagcgctatgaaaccacagtcggccgtgccctg
ctttccgaaattctgcccaaaggcctgccgtttgaatacatcaacaaggcgttgaagaaa
aaagaaatctcgcgactgattaatgcctcgttccgcctgtgtggcctacgcgatacagtg
atttttgcagaccacctgatgtataccggcttcagctttgcagccaaaggtggcatctcc
atctgcgtggatgatatggaggtaccgaaagagaaagtcaaactcttggccgaagccaac
gccgaagtgaaggaaatcgaagatcaataccgccaaggtttggttaccaatggcgagcgc
tacaacaaagtggtagatatttggggtcgtgccggcgataaaattgccaaggcgatgatg
gataatctttctaaacagaaagtgatcgaccgcgaaggcaaagaagtggatcaggagtcg
ttcaactccatctacatgatggccgactctggtgcgcgtggttctgccgcccagattaaa
cagctttccggtatgcgcggtctgatggccaagcctgacggttcgattatcgaaaccccg
attacctcaaacttccgcgaaggcctcaccgtattgcaatactttattgctactcacggt
gcacgcaaaggtttggccgatactgcgctgaaaaccgccaactcaggttacctaacccgc
cgcttggtggacgtgacccaagacttggtggtagtggaagacgattgtggtaccaacgac
ggcttcgtgatgaaagctgtggtacagggcggcgatgtgattgaagccctgcgcgaccgc
attttgggccgcgtaactgcacaagacgtggtggatccctccagtagcgccaccttggtg
gaggctggaaccctactcaacgagcagctggtagatttaatcgaccgttccggcgtggac
gaagtgaaagtccgcaccccgattacttgtaagacccgctatggtttgtgtgccaagtgc
tacggccgagacttggcgcgcggcaagctggtgaacaccggcgaagccgtgggcgtgatt
gccgcccaatccatcggtgagcccggtacacagttgactatgcgtaccttccacattggt
ggtgccgcctcccgtgctgccgccgccagccaggtggaagctaaatccaacggcactgcc
cgcttcagcagccagatgcgctatgtagccaacaacaaaggcgagttggtggtcatcggc
cgatcgtgtgagttagtgattcacgacgaagtaggtcgcgagcgcgaacgccacaaagtg
ccctacggcgccactttgctggtgcaggacggctctgcggttaaagccggccaaacccta
gccacttgggatccgcacactcgcccgatgattaccgaatacgccggccgtgtatgcttt
gaaaacgtggaagaaggcgtaaccgttacccgtcaaactgacgaaatcaccggcctctcc
actttggtggtgatcgatggtaaacgccgcaccagcaccagcaagctgctgcgccccacc
gtgaaactgttggatgggaacggcgaagaggtaactatgcccggcactgaaactcctgtt
tccatggcctttcccgtgggtgcggtgattaccgtgcgcgaagatcaggaagtgggcaag
ggcgacgtactggcgcgtatcccgcaggcctcttccaaaacccgcgacattactggtggc
ctgccacgtgtggccgagctgtttgaagcccgcgtgcccaaagatgccggcatgctggcc
gaagtaaccggcacggtgtctttcggtaaagaaaccaaaggcaaacagcgcctggtgatt
actgatttggagggtgcggcacacgaaactctgatttccaaagagaaacagattctggtg
cacgacggccaagtggtgaatcgcggcgagattatcgtggacggctcggttgacccgcac
gacattctgcgcctgcaaggcatcgaagcgctggcacgctacatcgtgcaggaagtgcaa
gaagtataccgcctgcaaggtgtgcgcatttccgataagcacatcgaagtgatcatccgc
cagatgctgcgccgcgtgaacattgccgacgccggcgaaaccggtttcatcaccggcgag
caggtggagcgtggcgacgtaatgcaggccaacgaacgcgccgttgccgaaggcaaagaa
ccggcacgcttcgacaatatcctgctgggtatcaccaaggcttcgctctctaccgacagc
ttcatttctgcggcctccttccaggaaactacccgcgtgcttaccgaagccgccatcatg
ggcaagaaagacgacctgcgcggtctgaaggaaaacgttattgtcggccggctgattccg
gccggtaccggcctcacttaccaccgcagccgccgtgcgcagtggcaggcgcatcacgag
gcgcaagtgaacgagcaggtggatgaagccgaataa
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