Enterococcus faecalis V583: EF0257
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Entry
EF0257 CDS
T00123
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
efa
Enterococcus faecalis V583
Pathway
efa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
efa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EF0257 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
efa03400
]
EF0257 (mfd)
Enzymes [BR:
efa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EF0257 (mfd)
DNA repair and recombination proteins [BR:
efa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EF0257 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
AAA_7
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AAO80122
UniProt:
Q839B9
LinkDB
All DBs
Position
233149..236718
Genome browser
AA seq
1189 aa
AA seq
DB search
MENSRKEGPCLNIIERISQTEIAKSWRSQLMTTGTRQLITGLSGSAKTLLMAGALQKTHQ
KIVIAVPNLYYANQLVDDFLNILPSEQVHLFPVDEVLSAEMAFSSPEARADRVSALNFLM
TANAGIVVVPVAGLRKYLPTKETWQNAQLYWEIGTEVEPEILAQRLVLMGYERQAMVGKP
GEFSIRGSIVDVYPLNAEYPVRVELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVF
SKADMNHGMTRLQDALEKRLATAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY
QQKTTLLDYLPENSLLFVDDYSRMMETEREIAREEAEWQTLKIEEMRVFSEQTFGVDFHD
QLRKTARNTTFFSLFQKGMGNLRFQEVHNFQYRSMQQFFGQMPLLKAEVDRWQKQNQTVV
VFVPTKERIQKVEELFQDFDIPSVVSNWDQLLDGHVQIVQGALQTGFELPKNKLVAITEK
EIFHTTTKKRARRQTISNAERLKSYSDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM
TILYQNDDKLFIPVTQLNLIQKFVASESKTPKINKLGGSEWTKTKRKVASKIEDIADDLI
LLYATRESEKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRPMDRLLVGD
VGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFPVEIGLLSRFRTK
KQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQV
DVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARD
GQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTT
IIETGVDIPNANTLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKR
LEAIKDFTELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVARKQGK
NIQDQKTSVEIDLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYEELEADLLDRFGEY
PDEVAHLLTTGRIKMDGDRALLESIRKRDQKVKFVLSKIGTKTYSVEQLFEALSATSLKA
DLAVEKEQMTISLKLPKDCKEAVWIQEIAAFTTALRQEKYKHSQGTDSL
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatagcagaaaggagggcccttgtttgaatattatcgaacgaattagccaaaca
gaaattgctaaatcatggcgcagtcaactaatgacaacaggaacgcgccaactaattact
gggttatcaggctctgctaaaacattactgatggcaggcgctttacaaaagacgcatcaa
aaaattgttattgcggtcccaaacctatactatgccaatcaattagtagatgatttttta
aatattttaccttcagaacaagttcatctatttccagtagatgaagtgttatccgccgaa
atggccttttcttcaccagaagcgcgcgcagatcgagtgagtgcgttaaatttcctgatg
acagcgaatgcaggaatcgtggtcgtaccagtagctggactacgaaaatatttgccaacg
aaagaaacgtggcaaaatgcgcaactttattgggaaatcgggacagaagtagaacctgag
atcctcgcgcaacgcttagtgttaatgggctatgaacgccaagcaatggtcggaaagcct
ggcgaatttagtattcgcggaagcattgttgatgtctatccgctaaatgccgaataccct
gttcgggtggaactgtttgatgttgaaattgactcaatccgttattttgaagcagatacc
caacgttcattagaaaatcttgaagaagtaacgatttcaccaatgactgatttagtattc
tcaaaggcagatatgaatcatggcatgacgaggttacaagatgctctagaaaaacgttta
gcgacagctaaagatcaaacggagaccgattttttagaagaatattttggtcagttgctg
tcttcttgggaacaagggattcctacagaaaatgctcactattatacagattttctgtac
caacaaaaaactacgctgttagattatttaccagaaaatagtttgctttttgtggatgat
tattctcgtatgatggaaacggagcgagaaatcgctagagaggaagcggaatggcaaacc
ctgaaaattgaagaaatgcgcgtgttttctgaacaaacttttggcgtagactttcatgat
caattgcgaaaaactgcacgaaatacgaccttcttttcactttttcaaaaaggaatgggg
aatcttcgtttccaagaagtccataatttccaatatcgttcaatgcaacaattcttcggt
caaatgccgttgctaaaagcggaagtggaccgttggcaaaagcaaaaccaaacggtcgtt
gtttttgttcctacgaaagaacggattcaaaaagtcgaagagctatttcaggactttgac
atacctagcgtagtaagcaattgggatcagttgttagatgggcatgtccaaattgtccaa
ggggcattacaaacagggtttgaattgcctaaaaacaagctcgtggcgattacggaaaaa
gaaatttttcatacaacgaccaaaaaacgggcacgtcgtcaaacaatctctaatgcggaa
cgtttgaaaagttatagcgacttaaaaacgggcgattatgtcgttcatgcgaatcacggg
attggtaaatatattggtatggaaaccttagaagttgatggggtccatcaagattacatg
actatcttgtaccaaaatgatgacaagttatttattccagtaacacaattgaacttgatt
caaaagttcgttgcttccgagtctaaaacgccgaaaattaacaagctaggcggcagtgaa
tggacgaaaactaaacgaaaagttgcttcgaaaattgaagatatcgcggatgatttaatc
ttactttatgcgacaagagagtcggaaaaaggctatgcttttccgccagatgatgcgtat
caaaaagaatttgaagaggcttttccgtattctgaaacagatgatcaattacgtagtgcc
gccgaaattaaacacgacatggaaaaatctcgaccaatggatcgtttgttagttggcgat
gtagggtttggtaaaacagaagtggctttacgagcggctttcaaagctgttagcaacaat
aaacaggttgcctttttagtgccaacaactattttagcgcaacaacattatgaaacgatt
caagagcggtttgagggctttcctgtagaaattggtttattaagtcgtttccgcacgaaa
aaacagcaaaatgaaacaattgaaaaaattaaacatggccaagtagatattgtgattggt
acccatcgtttattgtcgcaagatattaattttagtgatttaggcttgttgattattgat
gaggaacaacggtttggagtgaaacataaagaacgactaaaacaattgcgttcacaagtg
gatgtcttgacgttaacagcaacgccaatcccaaggacccttcatatgtcgatgttaggt
gtccgtgatttatccgtcatcgaaaccccaccagagaatcgttatccgatccaaacgtat
gtcatggaaaataatcctggggcgattcgggaagcgattgagcgagaaatggcccgagat
ggtcaagtcttttatttatacaatcgagtagatacgattgaacgaaaagttgaagagtta
caagcactagttccagatgcacgaattgcgtatgcacatgggcaaatgacagaagtacaa
ctggagaatactttgtttgattttattgaaggacaatatgatatattagtcactacaaca
attattgaaacaggagtagatattcctaatgctaataccttgtttgtagaaaatgcggac
tacatgggcttatctacgttgtatcaattacgtggtcgtgtggggcgtagcaatcgagtg
gcctatgcttattttatgtacgaacagcaaaaaatcctaaacgaagttagtgagaaacgt
ttagaagcaattaaagactttacggaattaggttctgggttcaaaattgcgatgcgtgac
ctttccattcgaggggccgggaaccttcttggtgcccaacaacacggcttcattgattcg
gttgggtttgatatgtactcgcagatgttatctgaggcagttgctcgtaaacaaggaaaa
aatatccaagaccaaaaaacgtctgttgaaattgatttgggcattgatgcttatattcca
ggaacgtacattacagacgaacgacaaaaaattgaaatttataaacggattcgtcaatta
gaaaatatggatatgtacgaagaattagaagcggacttgttagaccgctttggagagtat
cctgacgaagtggcgcatttattaaccactggccgtatcaaaatggatggcgaccgtgcc
ttgttagaaagtattcgtaaacgcgatcaaaaagtcaagtttgtgttaagtaaaattggc
acaaaaacatactctgtggagcagttgtttgaagcgttatcggcaaccagcttaaaagcg
gatctagcagttgagaaagaacaaatgactatttccttgaagttgccgaaagattgtaaa
gaagctgtttggattcaagaaattgctgcttttacaaccgcattgcgacaagaaaaatac
aaacattcgcaaggaacggattccctttaa
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