Enterococcus faecalis V583: EF2617
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Entry
EF2617 CDS
T00123
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
efa
Enterococcus faecalis V583
Pathway
efa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EF2617 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efa03019
]
EF2617 (vacB)
03016 Transfer RNA biogenesis [BR:
efa03016
]
EF2617 (vacB)
Enzymes [BR:
efa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EF2617 (vacB)
Messenger RNA biogenesis [BR:
efa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EF2617 (vacB)
Transfer RNA biogenesis [BR:
efa03016
]
Prokaryotic type
tRNA degradation factors
EF2617 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
S1_RRP5
Fucose_pyrophosphorylase
RNR_Alpha
Motif
Other DBs
NCBI-ProteinID:
AAO82326
UniProt:
Q830Z7
LinkDB
All DBs
Position
complement(2531338..2533707)
Genome browser
AA seq
789 aa
AA seq
DB search
MTKQTIKEQILHFMESQKKKSFSMEEIAQGLNLEKSSDFKILVQTIAQMEREKSVSFNKK
GKVLLPMKDLLIEGTFRANERGFGFVTIDPEEPDVYIPKEATNFAMDGDTVLIDVIQHAD
PFSDRGAEGKVKEIKERAVSQVVGEFVAYSEEEMAEMGLYGYMIPKDKKLNQYTVSIAPE
GIKPVDGSIVIAEITYYPDQEYPTSMEGLVKQVIGHKNDPGMDILSIVVAHGIPTAFPDE
VLAEADQVPETIAESDLVGRRDLRDQLIVTIDGEDAKDLDDAVTVQKLANGNFFLGVHIA
DVSYYVTEGSQLDMEAYERGTSVYLTDRVVPMIPQRLSNGICSLNPHVPRLTMSCEMEIT
PEGEVISHEIFQSVIQTTERMTYTAVNEILEEQKPETLERYKELVPMFKEMGELHHILEE
MRMRRGAISFEDREAKVLVDENGHPKDILLRTRGVGERLIESFMLAANETVARHYHDLKL
PFIYRIHEQPKEEKMQRFFDFAAVLGILVKGTKENISPKDLQKVLEQVENKPEEVVINTM
LLRSMQQAKYSEDNYGHYGLAAEYYTHFTSPIRRYPDLIVHRLIRSYSQDQSEKNQEKWN
EALPEIANHSSSMERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNT
IEGLIHVNNLKQDYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETREVDFELISA
EEVAPVEGPKGRKKGKANSSTRSNNQRRNKKDESFDGKKKKNKKKGKGKKQPFYKEAMKQ
KNKKGKKKK
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaacaaacaattaaagagcaaattttacatttcatggaaagccaaaaaaagaaa
agcttttcaatggaagaaattgcacaaggcttgaatttagaaaaaagttcagattttaaa
attttagtgcaaaccattgcacaaatggaacgagaaaagtcagttagtttcaacaaaaaa
ggcaaagtcctgttaccaatgaaagacttattaatagaaggaacgtttcgtgcaaatgaa
cgaggctttggttttgtaaccatcgatcctgaagaaccagatgtttatattccgaaagag
gcaacgaactttgcaatggatggagatacggttttaatcgacgtgatccaacatgcggat
cctttttcagatcgcggcgcagaaggtaaagtcaaagaaattaaagagcgagcagtgagc
caagttgtcggagaatttgtggcatatagtgaagaagaaatggcagaaatgggactgtat
ggctacatgattcccaaagataagaaattgaatcagtatactgtatcaattgcacctgaa
gggattaagccagtagatggtagcattgtcattgctgaaattacctattatccagatcaa
gaatatccaacgagtatggaaggactagtcaaacaagtgattggtcataaaaatgatcca
ggaatggatattttatcaatcgtggtggctcatggaattcccacagcatttcctgatgaa
gttttggctgaagcggaccaagtaccagaaactattgcagaaagcgatttagtcggtcgt
cgggatttacgtgatcagttgattgtgacgattgatggagaagatgcgaaagatttagat
gatgcagtaacggtacaaaagttagcaaatggcaatttctttttaggggtgcatattgca
gatgtttcttattatgtaactgaaggaagccaattggatatggaagcgtatgaacgtggt
acaagtgtctatttgacagaccgagttgtgccaatgattccgcagcgattatcaaatggg
atttgttcgctaaacccacatgttccacgtttaaccatgagttgtgagatggaaattaca
ccagaaggagaagttatttcgcatgaaattttccaaagtgtaatccaaacaacggagcga
atgacctatacagcagtcaatgaaattttagaagagcaaaaacctgaaacgttagaacgc
tacaaagaactagttcccatgtttaaagagatgggtgagctgcaccatatattagaagag
atgcgtatgcgccgtggtgcgatttcttttgaagatcgtgaagccaaagtcctagttgat
gaaaatggtcatcccaaagatattcttttacgcacgcgtggtgtgggtgaacgattaatt
gaatcctttatgttggcagcgaatgaaactgtggcgcgtcattatcatgacttaaaactg
ccatttatttatcggattcatgaacaaccaaaagaagaaaaaatgcaacgtttctttgac
tttgctgcagtacttggcattcttgttaaaggaacaaaagaaaacatttcaccgaaagat
ttacaaaaagttttagagcaagttgaaaataagccggaagaagtggttatcaatacgatg
ttgctaagaagtatgcaacaagcgaaatactcagaagacaactacggacactatgggttg
gctgctgaatattatacgcatttcacttcaccaatacgtcgttatccagatttaattgtg
catcgtttgattcgcagctatagccaagatcaatctgaaaaaaatcaagaaaaatggaac
gaagcattaccagaaattgccaatcatagttcaagtatggaacgtcgcgcagttgatgca
gagcgtgaagtggacgccatgaagaaagccgaatttatggtagataaagtgggagaaacg
tatgacgggattatcagctcagtcacaaaatttggtatctttgtggaactgcctaataca
atagaaggcttgattcacgtgaacaacttaaaacaagattatttccactttattgaaaat
catatggcgttagttggtgaacggacgggaatgactttgaaaattggtcagaaagttcaa
atccgtgttgaaaaagctgatccagaaacaagagaagttgattttgaattgatttcagct
gaggaagtcgcgccagtcgaaggaccaaaaggacgtaaaaaaggcaaagccaattcttca
actcgttcaaataatcaacgaagaaataaaaaagatgaatcatttgatggtaagaaaaag
aaaaataagaaaaaaggcaaaggcaaaaaacaacctttttataaagaagcaatgaaacaa
aaaaataaaaaagggaaaaagaagaagtag
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