Empedobacter falsenii: FH779_01595
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Entry
FH779_01595 CDS
T06702
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
efal
Empedobacter falsenii
Pathway
efal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
efal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FH779_01595 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
efal03021
]
FH779_01595 (rpoC)
03400 DNA repair and recombination proteins [BR:
efal03400
]
FH779_01595 (rpoC)
Enzymes [BR:
efal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FH779_01595 (rpoC)
Transcription machinery [BR:
efal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FH779_01595 (rpoC)
DNA repair and recombination proteins [BR:
efal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FH779_01595 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QLL56855
UniProt:
A0A7H9DPB8
LinkDB
All DBs
Position
336740..341017
Genome browser
AA seq
1425 aa
AA seq
DB search
MSTKNKTSQFSKIRIGLASPESILQESKGEVLKPETINYRTHKPERDGLFCERIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYI
LGLPSKKLDMVIYYERYVVIQAGIAKGPEGEELNRLDFLSEEEYLDILETLPIENQYLED
TDPNKFVAKMGAEALEDLLSRINLDELSYELRHKAHNETSKQRRTEALKRLQVVESLRES
NMHHVNRPEWMVMRVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLMEIK
APEVILRNEKRMLQEAVDSLFDNTRKASAVKADGNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPTLKLHECGLPKDMAAELYKPFVVRKLIERGIVKTVKSAKKIIDRKEP
VVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLVCTAFNADFDGDQM
AVHLPLGPEAVLEAQLLMLASQNILNPANGSPITVPSQDMVLGLYYMTKIRRTDHQFTVK
GEGLTFYSDEEVQIAYNEGAVDLNAPIRVKGTIRVGEELVENQLIETSVGRVLFNQIVPK
QVGYINEVLTKKSLRTIINKIIKITDFPTTAAFLDDMKQLGYRNAFEGGLSFSLGDILIP
EQKKDLISGAINQVENIKMNYNMGLITNNERYNQVIDVWTTTNATLTEIVMKRMTEDQQG
FNSVFMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGGDIIENPIISNFREGLSILEY
FISSHGARKGLADTALKTADAGYLTRRLVDVAQDVIVMHEDCGTLRGLEVTALKKKEEII
ESLSSRVLGRTSLNDIYNPDNGELIISAGNIITEDVGDALEAAGIENVEVRSPLTCEAKT
GICAKCYGRNLATGKGVQKGESVGVVAAQSIGEPGTQLTLRTFHVGGTAGNVSEQNTINA
KVDGTVEFDDLRTVESTDDAGNKVDTVVSRSTEMKVIDDLGNVRQQTNIAYGTILSVKNG
AKVQKGQEIASWDPYNGVIIAESTGKIEYEQLEQGVTFQIEIDEQTGFQEKVISESRNKK
LVPALRVITIDGEEKTYNLPVGAHLMVNDGEKINAGKILVKIPRKSAKSGDITGGLPRIT
ELLEARNPSNPSVVCEMDGVVSFGKIKRGNREIIVESKNGEIRRYLVKLSAQILVQENDF
VRAGEPLSDGAITPEDILRILGPTAVQEYLVNEIQDVYRLQGVKIDDKHFEIIVRQMLRK
VRIVDSGDSRFLEDSLEHKDDFMQENDRLFGMKVVEDAGDSDTLSAGQIITVRELRDENS
KLKREDKNLVTAREALPATAEAVLQGITRASLQTKSFMSAASFQETTKVLNEAAVAGKVD
GLVGLKENVIVGHLIPAGTGLKEYQNIIVGSNREYEELINAKQEI
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaaaaaataaaacaagtcaattctcaaaaatccgtatcgggttagcttctcca
gaatcgattcttcaagaatctaaaggtgaagttttaaaacctgaaacgattaactataga
acgcacaaaccagagcgtgacgggttattctgtgagcgtatctttggacctgtaaaagat
tacgaatgtgcctgcggaaaatataaaagaatccgttataaaggtatcgtttgtgaccgt
tgtggggttgaagttactgaaaagaaagttcgtcgtgagcgtattggacacatcaatctt
gttgttccaattgcacatatttggtatttccgttcattaccaaacaaaattggttacatc
ttaggattaccatctaagaaattagacatggtaatttactacgaaagatatgtagtgatt
caagcaggtatcgcaaaaggaccagaaggtgaagaattaaatagattagatttcttatca
gaagaagagtatttagatattttagaaactcttccaatcgagaatcaatatctagaagat
acagatccgaataaattcgttgcgaaaatgggtgctgaagcattagaagacctattatct
cgtatcaatttagatgagttatcttacgaattaagacacaaagcacataacgaaacttct
aaacaacgtcgtacagaagcgttaaaacgtttacaagttgttgagtcgttacgtgagtca
aatatgcaccacgtaaaccgtccagaatggatggtaatgcgcgttattccggttattccg
ccagaattacgtccattagttccattagatggtggtcgttttgcaacatcagatttaaac
gatttatatcgtcgtgtaattatccgtaataaccgtttgaaacgattaatggaaatcaaa
gcgccagaagtaatcttacgtaatgaaaaacgtatgttacaagaagcggttgattcatta
ttcgataacacacgtaaagcatctgctgtaaaagctgatggtaaccgtccgttaaaatca
ttatctgattcattaaaaggtaaacaaggtcgtttccgtcaaaacttattaggtaaacgt
gtggattattctgctcgttctgtaattgttgttggaccaacacttaagttacacgaatgt
ggtttaccaaaagatatggcagctgaattatacaaaccattcgtagttcgtaaattaatc
gagcgtggaattgtaaaaacagttaaatcggctaagaaaattatcgatagaaaagagcca
gttgtttgggatattttagaaaatgtaatcaaaggtcacccagttttattaaaccgtgcc
cctacgttacaccgtttaggtatccaagcattccaaccgaaattaatcgaaggtaaagca
attcgtttacacccattagtgtgtactgccttcaatgccgatttcgatggtgaccagatg
gccgttcacttaccattaggaccagaagctgttttagaagcacaattattaatgttggct
tctcaaaatattttgaatcctgctaatggttctccaattactgtaccttctcaggatatg
gttttaggtctttactacatgacgaaaattcgtcgtactgaccaccaatttacagtaaaa
ggtgaaggattaactttctattcagacgaagaagttcaaattgcatacaacgaaggagct
gttgacttaaacgccccaattcgtgtaaaaggaacaattcgtgtaggagaggagttagta
gaaaatcaattaatcgaaacttcagtaggacgtgtgttattcaaccaaattgttccgaaa
caagtaggttatattaatgaagtattaacgaaaaaatcgttacgtacaattattaataaa
atcatcaagattacagatttccctacaacggctgctttcttagatgatatgaaacaatta
ggataccgtaatgccttcgagggtggtttatcattctcattaggagatatcttaatccca
gaacaaaagaaagaccttatctctggtgcgatcaaccaagttgagaacattaagatgaac
tataacatgggtcttattacaaataacgaacgttacaaccaagttattgatgtttggaca
acaacaaacgcaacattaacagaaattgtaatgaaacgtatgacagaagatcaacaagga
tttaactctgtattcatgatgcttgattctggagcgcgtggatctaaagagcaaattcgt
cagttatcaggtatgcgtggattgatggctaaacctcaaaaagctggttctactggtggg
gatatcatcgaaaacccaattatctctaacttccgtgaaggtctgtctatcttagagtac
tttatttcttcgcacggtgcgcgtaaaggtcttgccgatactgccttaaaaactgccgat
gctggatacttgactcgtcgtttagttgacgttgcacaagacgttatcgtaatgcacgaa
gattgtggtacattaagaggtttagaagttacagcacttaagaaaaaagaagaaatcatc
gaaagtttatcttctcgtgtattaggtcgtacttcattaaatgatatttacaacccagat
aatggtgaattaatcatttctgctggtaacattattacagaagatgttggtgatgcttta
gaagcagctggtatcgaaaatgtagaggttcgttctccattaacatgtgaagcgaaaact
ggaatttgtgctaaatgttacggacgtaacttagctacaggtaaaggtgttcaaaaaggt
gaatcagttggtgtagttgctgcacaatctattggtgagcctggtacacagttaacatta
cgtactttccacgttgggggtactgcgggtaacgtttctgagcaaaatacaattaatgct
aaagttgacggtactgttgagtttgacgacttacgtactgttgaatcgacagatgatgca
ggtaacaaagtagatacagttgtttctcgttctacagagatgaaagtaattgacgattta
ggaaacgttcgtcaacaaactaacatcgcttacggtactatcttatctgttaaaaacgga
gctaaagttcaaaaaggtcaagagattgcaagttgggacccttataacggggtaatcatc
gcggaatctactggtaaaatcgagtacgaacaattagagcaaggggtaactttccagatt
gaaatcgatgagcaaacaggattccaagaaaaagttatttctgaatcacgtaataaaaaa
ttagttccagcgttaagagttatcactattgatggtgaagaaaaaacatacaacttacca
gtaggtgcacacttaatggtaaatgatggtgaaaaaattaatgcaggtaaaatcttagtt
aagattcctcgtaagtcagctaaatctggcgatattacaggaggtttacctcgtattaca
gagttgttagaggctcgtaatccatctaacccatcagttgtttgtgaaatggatggagtt
gtatctttcggtaaaataaaacgtggtaaccgcgaaatcattgttgaatctaaaaatggt
gagatccgtcgttacttagttaaattatcagcacaaatcttagttcaagaaaatgacttc
gtacgtgcaggtgagcctttatcagatggagcaattacaccagaagatattttaagaatc
ttaggaccaacagcggttcaagaatacttagtaaacgagattcaagatgtataccgttta
caaggggtaaaaatcgatgacaaacacttcgaaattatcgtacgtcaaatgttacgtaaa
gttcgtattgtagactcaggagattcaagattcttagaagatagtttagagcacaaagat
gatttcatgcaagaaaacgatcgtttattcggaatgaaagtcgtagaagatgctggtgat
tctgacacattaagtgcaggacaaatcatcacagttcgcgaattacgtgacgaaaactct
aaattaaaacgtgaagacaaaaacttagtaacagctcgtgaggctttacctgcaacagca
gaagcagttttacaagggattacaagagcgtctttacaaactaaatctttcatgtctgcg
gcatcgttccaggaaactacaaaagttcttaacgaagcagctgtagctggtaaagtagac
ggtttagtaggattaaaagaaaacgttattgttggacacttaattcctgccggaactgga
ttaaaagagtatcaaaatatcatcgtaggatctaaccgtgaatacgaggaattaataaac
gcaaaacaagaaatataa
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