Empedobacter falsenii: FH779_04390
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Entry
FH779_04390 CDS
T06702
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
efal
Empedobacter falsenii
Brite
KEGG Orthology (KO) [BR:
efal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
efal03016
]
FH779_04390
Enzymes [BR:
efal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FH779_04390
Transfer RNA biogenesis [BR:
efal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FH779_04390
Prokaryotic type
tRNA splicing ligases
FH779_04390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QLL57367
UniProt:
A0A7H9DQB8
LinkDB
All DBs
Position
complement(934082..935527)
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AA seq
481 aa
AA seq
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MKTTEQQNKPINGNDLIALGYPENEILGIALKINKKRNGYTKAEMLDKYAQVFSSPQDFL
EDKIFKTLAKGFIDGIHLPNQDENLIELNENPTDFKIYGAEKIEDGALEQMKVAMKLPVT
VAGAIMPDAHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSIYDLPASHYFEHHDSLK
ETLIKNTKFGAGHGFHGQYKAEHQILDDAKFETNSFIQNLKDKAWSQLGSSGGGNHFVEF
GLIDFKEDDEKLNIKKGSYLALLTHSGSRGFGATIAGHYTKIAKEICKLPYKAQNLAYLD
LDSAEGQEYWIAMNLAGEYASACHEIIHQKIAKSIGAEVLAKVENHHNFAWKEIYNGEEV
IVHRKGATPASKDIMGIIPGSMTAPGFLVRGKGEENSIHSASHGAGRQMSRTQAIKSLSQ
NKINDYLNYFGITLIGGGKDEAPMAYKDIHEVMAAQQDLVDVVATFTPKMVRMADDGSRE
D
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaactgaacaacaaaataaaccgatcaatggaaacgatttgattgccttgggt
tatcctgaaaacgaaattttaggaattgccttaaaaatcaacaaaaaaagaaatggttac
acaaaagccgaaatgcttgataaatatgcgcaagttttttcttcgccacaagatttttta
gaagataaaattttcaaaacgcttgcaaaaggctttatcgatggaattcatttaccaaat
caagatgaaaacttgattgaattgaatgaaaatccaaccgatttcaaaatttatggtgcg
gaaaaaattgaggacggcgctttagaacaaatgaaagtcgccatgaaacttcctgttacc
gttgctggcgcaattatgcctgatgcgcatcaaggttatggattaccaattggcggagtt
ttagcaaccaaaaatgcgattattccttatggtgtcggcgttgatattggatgtagaatg
gctttatcgatttatgatttacctgcttctcattattttgaacatcacgattcattaaaa
gaaactttgatcaaaaatacaaaatttggtgcaggacatggttttcatggtcaatacaaa
gctgaacatcagattttagatgatgcaaaattcgagacgaattcatttattcaaaattta
aaagataaagcgtggtcgcaattgggttcttctggtggaggaaatcattttgtagaattt
ggtttgattgatttcaaggaagatgatgaaaaactgaacatcaaaaaaggttcatatttg
gctttgctaacgcactctggatcgagaggttttggcgctacaatcgctggacattataca
aaaattgcaaaagaaatttgtaaacttccgtacaaagcacagaatttggcttatttagat
ttagattcagccgaaggtcaagaatattggattgcgatgaatttggcgggtgaatatgct
tcagcttgtcacgaaattattcatcaaaaaattgcaaaatcaattggtgctgaagtttta
gcgaaagtagaaaatcatcataattttgcttggaaagaaatttacaatggcgaagaagtc
attgttcatcgaaaaggtgcaacgccagcttctaaagatataatgggaattattccaggt
tctatgactgcgccaggatttttggttcgaggaaaaggtgaagaaaattcgattcattct
gcttcgcatggagctggtcgacaaatgagccgaacacaagcgattaaatcattatctcaa
aataagataaacgattatttgaattattttggaattacattaattggtggtggaaaggat
gaagcgccaatggcatataaagatattcacgaagtaatggctgcgcaacaagatttagta
gatgttgtggctacttttacacctaaaatggtcagaatggccgatgacggatcgagagaa
gattaa
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