Empedobacter falsenii: FH779_04510
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Entry
FH779_04510 CDS
T06702
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
efal
Empedobacter falsenii
Pathway
efal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH779_04510 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efal03019
]
FH779_04510 (rny)
Messenger RNA biogenesis [BR:
efal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FH779_04510 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH-I_KHDC4-BBP
KH_KhpA-B
DUF4748
EMC3_TMCO1
UPF0154
HEAT_2
DUF3836
Cucumo_2B
Motif
Other DBs
NCBI-ProteinID:
QLL57390
UniProt:
A0A7H9DQS4
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Position
959409..960971
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AA seq
520 aa
AA seq
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MTIIIAIVTLIIGAAVGYFLSKKSVDKQNQELIDEATRKAQNLINDAEKDGEAIKKEKIF
QAKEKFLELKSKHEEVVNQRERKVADAELKVKEREERIKTDLAEIQKQKDQIKSEKGNIQ
ARTEKLNIKQKEVDTMHKKQVEILEKISNYSADEARAELIEVLKDEARTKAQAHIQEIME
EAELDAKSEARKIVISSIQRIGTEQAIENAVSVFNIESDEIKGRIIGREGRNIRAIEAAT
GVEVIVDDTPEAIILSCFDPVRREIARLSLHRLVTDGRIHPARIEEVVAKTTKQIEDEII
EVGKKTILDLGIHGLHKDLVRIVGRMKYRSSYGQNLLQHSREVANLAGTLAAELGLNPKL
AKRAGLLHDIGKVPEQESELPHAILGMQWAEKYGEHPDVINAIGAHHDEIEMTSLISPLV
QVADAISGARPGARRQVVESYMQRLKDLEATALNFDGVEKAYAIQAGRELRVIVESDKVD
DTKAAELSFLISDKIQNEMTYPGQVRVTVIRETRAVNIAR
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgacaataattattgcaattgttacattaatcataggtgcagcggtgggatatttctta
tcaaaaaaatcagttgataaacagaatcaagaactgattgacgaagcaactcgcaaagca
caaaatttgattaatgatgctgagaaagatggtgaagccattaaaaaagagaaaattttt
caagccaaagagaaatttttagaattaaaatctaaacacgaagaagttgttaatcaacgt
gaaagaaaagtagctgatgctgagcttaaagtaaaagaacgtgaagagagaatcaaaacg
gacttagcagaaattcagaaacaaaaagatcagattaaatctgagaaaggaaatatacaa
gcacgtacagaaaagcttaatattaagcaaaaagaagtggatacgatgcacaaaaaacaa
gtagaaatccttgaaaaaatttcgaattattctgctgatgaagcacgtgccgaactgatt
gaagtcttaaaagacgaagcaagaactaaagcacaagctcatatccaagaaattatggaa
gaggctgaattagatgcgaaaagcgaagcgcgtaaaattgtgatttcttctattcaacgt
attggtacagagcaagctattgagaatgcggtttctgtatttaatattgagtctgacgaa
attaaaggacgtatcattggtcgtgaaggacgtaacattcgtgcaattgaggctgcgact
ggagttgaggtgattgttgatgatacgccagaagcgattatcctttcttgtttcgaccct
gttcgtcgtgaaattgctcgtttgtctttgcatcgcttagtaacggacggacgtattcac
ccagcacgtattgaggaagttgttgcgaaaacaacaaaacaaatcgaggacgaaattatc
gaagttggtaagaaaacaattttagatttaggaattcatggtttacacaaagatttggtt
cgtatcgttggacgaatgaaatatcgttcttcttatggtcaaaacttattgcaacactct
cgcgaggtggcaaacttagcaggaacgttggctgcggaattaggattgaatcctaagtta
gcgaaacgtgcaggtttattacacgatattggtaaagttccggagcaagaatctgaattg
cctcacgcaattttgggtatgcaatgggcagaaaaatatggggaacatccagatgtaatt
aacgcgattggagctcaccacgacgaaattgagatgacttctttaatttcaccacttgta
caagtagccgatgcaatttctggtgctcgtccaggtgctcgtcgtcaagttgtggaatcg
tatatgcaacgtttaaaagatttagaagctacggctcttaactttgatggtgtagaaaaa
gcatacgcgattcaagctggtcgtgagttgcgtgtgattgtagaaagtgataaagttgat
gatacaaaagcagctgaattatcgttcttaatttcagataaaattcaaaacgaaatgact
tatccaggtcaagttcgtgtaactgtaattcgtgaaacgcgtgcagtaaatattgcaaga
taa
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