Empedobacter falsenii: FH779_06030
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Entry
FH779_06030 CDS
T06702
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
efal
Empedobacter falsenii
Pathway
efal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH779_06030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efal03019
]
FH779_06030
03009 Ribosome biogenesis [BR:
efal03009
]
FH779_06030
Enzymes [BR:
efal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FH779_06030
Messenger RNA biogenesis [BR:
efal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FH779_06030
Ribosome biogenesis [BR:
efal03009
]
Prokaryotic type
rRNA helicases
FH779_06030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RAG1_ZnH2
CMS1
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QLL59810
UniProt:
A0A7H9DXH0
LinkDB
All DBs
Position
1288981..1290870
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AA seq
629 aa
AA seq
DB search
MITFKELGLQEEILTAIEKMGFVNPSPIQEKAIPQILSSDQDVIALAQTGTGKTAAFGLP
VLNQLDSNSKSVQAIILCPTRELCLQIAKELESFSADMRGVRVQAVYGGADIVKQIRGLK
DNPQIVVGTPGRTMDLIKRGALKINDITWTVLDEADEMLNMGFRDEIDSILETTPEEKQT
LLFSATMPSEVRRIASEYMHNPVEIAVSKVNTASKNIEHHVYLVRSSDRYLALKRLADYY
PNIYGIVFCRTRREAKDVADKLMQDGYNADALHGDLSQSQRDHVMEKFRNQNIQILVATD
VAARGIDVNELTHVINFNLPDDPEVYVHRSGRTGRAGNKGISIIISGGREARKIRDLEKL
IASKIEPKNVPTGAEICEKRLISLIDKIENIEVDEELIEPYMETVNEKLANLDRDDLLKR
FMTVEFNSFLEYYKNTKDISSEGDRGDRGDRSSNRRGGRDFSRFFINIGQKHNLRVPNLI
GLINEQTRNRNIEIGKIEILRNFSFFEVDTQFESLVLESFKDAQRDGVDLDVQISKPEPR
RGDGERRGGDRRRNDRGGDSRGRGFNSRRDNDRERSGGYRGGDRDRGGDRGGFRGGDRDR
DSRDSRGGDRGGYRGGDRNRTGNSRRGRD
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgattacattcaaagaattaggacttcaagaagaaatcctaactgcaattgagaaaatg
ggcttcgttaacccatctccaatccaagaaaaagctattcctcaaatcctttcatcagat
caagatgttattgcattggcgcaaacaggtacaggaaaaactgcagcattcgggcttccg
gttttaaatcaattagacagcaattcaaaatcagtacaagcaattattttgtgtcctact
cgtgaattatgtttacaaattgcaaaagaattagaatctttttctgctgatatgcgtgga
gtacgtgtacaggcagtttacggtggtgctgacatcgttaaacaaattagaggattaaaa
gataatccacaaatcgttgtaggaacaccaggtcgtacaatggacttaattaaacgtggt
gcattaaaaattaatgatatcacatggacagttttagatgaggcagatgagatgttgaac
atgggattccgtgacgaaatcgattctatcttagaaacaactccagaagaaaaacaaact
ttattattctcagctacaatgccttcagaggttcgtcgtatcgcttcagaatatatgcac
aatccagttgagattgctgtgagtaaagtaaatactgcatcaaaaaatatcgagcaccac
gtttacttagtacgttcttctgatcgttacttagctttaaaacgtttggccgattattac
ccaaatatttatggtatcgttttctgtagaactcgtcgcgaagcgaaagatgtagcagat
aaattgatgcaagatggttacaatgcagacgcattacacggagatttatcacaatcgcaa
cgtgatcacgtgatggagaaattccgtaaccaaaacattcaaatccttgttgcaacagac
gttgctgctcgtggtatcgacgtaaatgagttgactcacgtaatcaacttcaatttacca
gatgatcctgaagtttatgtacaccgttcaggacgtacaggacgtgcgggtaacaaaggg
atttctatcattatctcaggaggacgtgaagcgcgtaaaattagagatttagaaaaatta
attgcttctaaaatcgagcctaaaaacgtaccaactggagcagaaatctgtgaaaaacgt
ttaatttctttaatcgataaaatcgaaaacatcgaagttgatgaagaattaatcgagcct
tacatggaaactgtaaacgaaaaattggcaaacttagatcgtgacgatttattaaaacgt
ttcatgacagttgagttcaattctttcttagaatattacaaaaacacgaaagatatttct
tcagaaggagatcgtggtgatagaggagatcgttcttctaaccgccgtggaggtcgtgat
ttctctcgtttctttatcaatattggtcaaaaacacaacttacgtgttccaaacttaatt
ggtttaatcaacgagcaaactcgtaaccgtaacatcgaaataggaaaaattgaaatttta
cgtaatttctctttcttcgaagttgatacacagttcgaatcattagtgttagaatctttc
aaagatgcacaacgcgatggtgtagatttagatgttcaaatctctaaaccagaaccaaga
cgtggtgatggtgagcgtcgtggaggagatcgtcgtcgtaatgacagaggaggagattct
cgtggacgtggtttcaatagccgtcgtgataatgaccgcgaaagaagtggaggttatcgt
ggtggagatcgtgatcgcggaggagacagaggtggattccgtggcggagatcgtgaccgt
gattcaagagattctagaggaggagatcgtggtggttaccgcggtggagatcgtaacaga
acaggaaactcaagaagaggtagagattaa
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