Empedobacter falsenii: FH779_11870
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Entry
FH779_11870 CDS
T06702
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
efal
Empedobacter falsenii
Brite
KEGG Orthology (KO) [BR:
efal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
efal03009
]
FH779_11870 (rlmD)
Enzymes [BR:
efal01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FH779_11870 (rlmD)
Ribosome biogenesis [BR:
efal03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FH779_11870 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
Cons_hypoth95
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_11
N6_N4_Mtase
FtsJ
DUF3825
PrmA
Motif
Other DBs
NCBI-ProteinID:
QLL58745
UniProt:
A0A7H9DUJ5
LinkDB
All DBs
Position
2549328..2550746
Genome browser
AA seq
472 aa
AA seq
DB search
MSRKAKQKIILNNIEVLRAGAKGVSVGKTEEGKTVLIKGAIPGDVVDVHVLKKKSSYLEG
QAIEIHAKSPYRVQPECEHFGVCGGCKWQDMSYDAQLKFKHDEVVNNLVRIGGFKDLDAE
IVPILGSKEQYFYRNKLEFTFSNARWLTLEEIQSGKEFDDRDVVGFHIPGAWSKVLDVTK
CHLQRDPSNAIRVEAKRFALEHNLDFFDLKNQEGLLRTLMIRTSQNGQVMVLVQFFREEK
ENREAFLQNLKDKFPEITSLLYAINPKQNDSVYDLDIEVFAGEDHIMEKMEDLNFKIGPK
SFYQTNPEQAYELYKLTRDFAGLTGNELVYDLYTGTGTIAQFVSKKAKKVVGVESVQEAI
DAAKAAAKFNGIDNCDFYCGDMKDVLNQDFINEHGIPDVIITDPPRDGMHKKVVENILFM
NPKRVVYVSCNSATQARDLELMKDQYKIVKVQPVDMFPQTHHVENIVLLERI
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaaaagcgaaacaaaaaatcatattaaataatatagaagttttacgtgctggt
gcaaaaggtgtatcagttggtaaaacagaggaaggaaaaacggttctgataaaaggtgcg
attccaggagacgttgtagatgtacacgttttgaagaaaaaaagcagctatttagaggga
caagcaatcgaaattcacgcaaaatctccttatcgcgttcagccagaatgtgagcatttt
ggtgtttgcggtggttgtaaatggcaagatatgagctatgatgcgcaacttaaatttaaa
cacgacgaagtggttaacaatttggttcgtattggaggtttcaaagatttagatgctgaa
attgttccaattttaggttctaaagaacaatatttttaccgtaataaattagaatttact
ttttctaatgcacgttggttaacgttagaagaaattcagtctgggaaagaatttgacgac
cgtgacgtagttggattccatattcctggtgcttggtctaaagttttggatgttacaaaa
tgtcacttacaacgtgatccttcgaatgcgattcgtgttgaagcaaaacgttttgcatta
gaacataacttagatttcttcgatttaaaaaatcaagaaggtttattaagaacattaatg
attcgtacttctcagaatggacaagtaatggttttagttcaatttttccgtgaagaaaaa
gaaaatcgtgaagctttcttacaaaacttgaaagataaattccctgaaatcacctcttta
ttgtatgcaattaatccgaaacaaaacgattctgtttatgatttagatatcgaagttttt
gctggagaagatcatattatggaaaagatggaagatttgaatttcaaaattggtccaaaa
tctttttatcaaaccaatccagaacaagcttacgaattatataaattaacacgtgatttt
gcaggtttaactggaaatgaattagtgtacgatttatatacaggaactggaacaattgcg
caattcgtttcgaaaaaagctaaaaaagtagttggtgtagaatctgttcaagaagcgatt
gatgcagcaaaagcggcagcaaaattcaatggaattgataattgcgatttctattgtggt
gatatgaaagatgtattgaatcaagattttatcaacgaacacggaattccagatgtaatt
attactgatcctccacgtgatggaatgcataaaaaagtggttgaaaatattttgttcatg
aatccaaaacgtgttgtttacgtttcgtgtaactctgctacacaagcgcgcgatttagaa
ttgatgaaagatcaatataaaattgttaaagttcagccagttgatatgtttccgcaaaca
catcatgtagaaaatattgtacttttagagcgaatttaa
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