Empedobacter falsenii: FH779_13225
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Entry
FH779_13225 CDS
T06702
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
efal
Empedobacter falsenii
Pathway
efal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH779_13225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efal03019
]
FH779_13225
Enzymes [BR:
efal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FH779_13225
Messenger RNA biogenesis [BR:
efal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FH779_13225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Flavi_DEAD
AAA_22
HEM4
SUa-2TM
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QLL58990
UniProt:
A0A7H9DV46
LinkDB
All DBs
Position
2826932..2828167
Genome browser
AA seq
411 aa
AA seq
DB search
MNFSELNIIEPILKAIEEAGYTEPTEIQEQSIPLVLEGNDIIGCAQTGTGKTASFAIPIL
QNLTNSPSKRRKIRTLILTPTRELAIQINESFKLYGKNLPLKHLAIFGGVNQNPQIGAIK
NGVDILIATPGRLLDLIGQGHLKINQIEIFVLDEADRMLDMGFVHEIKKILEIIPKERQS
LFFSATMPKNIRKFSHSVLRRPKEVSVTPVSSTAETVEQFVYHVDKDMKVKLLVSILNEH
PEDRTLIFTRTKHGANRLVRHLEKAGIPAAAIHGDKSQNARQRALNDFKEEKLKVLIATD
IAARGIDIDQLPYVINYELPNIPETYVHRIGRTGRAGREGKAISLCAADERGDLANIEKL
IGNYVTVIKTPKEFYKLPDANSNNNNFKKNNTGFKPKKDTKPKNPHRGRRK
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttcagaattaaatataattgaaccaattttaaaagcaattgaagaggctgga
tatacagaaccaaccgaaattcaagagcaatctattcctttagttttagaaggaaatgat
attattggttgcgcgcaaacaggaacaggaaaaacggcatcttttgcgattcctattcta
caaaacttaacaaattctccgagtaaaagaagaaaaattagaacattaattttaacgcca
acgcgtgaattagccattcaaatcaacgaaagttttaaattatatggtaaaaatttaccg
ttaaaacatttggcgatttttggaggtgttaatcaaaatccacaaattggagccatcaaa
aatggtgttgatattttaattgcaacgccaggccgtttgttagatttgattggacaagga
catctaaaaattaatcaaatcgagatttttgttttagatgaagccgatcgtatgttggat
atggggtttgttcatgaaatcaaaaagattttagaaatcattccaaaagaaagacaatca
cttttcttttcggcaacaatgccaaaaaacattcgaaaattttctcattcagttcttcgt
cgtccaaaagaagtcagcgtaacacctgtttcttcgactgccgaaacggttgagcaattt
gtttatcatgtagacaaagacatgaaagtaaaacttttggttagcattttaaatgaacat
ccagaagatcgtactttgatttttacacgaacaaaacacggcgcaaatcgtttggtaaga
cacttggaaaaggctggaattccagccgctgcaattcatggcgataaatctcaaaatgcc
agacaacgtgctttgaatgatttcaaagaagaaaaattaaaagtattaattgccactgat
attgctgctcgtggaatcgatattgatcaattaccttatgtgatcaattacgaattaccg
aatattcctgaaacatatgtacaccgaattggacgtactggtagagcaggacgcgaagga
aaagcgatttctttatgtgctgccgatgaaagaggcgatttggcaaatattgagaaatta
attggtaattatgtaacagtgattaaaacaccaaaagagttttataaattacctgacgcg
aatagtaacaataataatttcaagaaaaataatactggttttaaaccaaaaaaagataca
aaaccaaagaatcctcatcgaggaagaagaaaataa
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