Empedobacter falsenii: FH779_14775
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Entry
FH779_14775 CDS
T06702
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
efal
Empedobacter falsenii
Brite
KEGG Orthology (KO) [BR:
efal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
efal03016
]
FH779_14775
Enzymes [BR:
efal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FH779_14775
Transfer RNA biogenesis [BR:
efal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FH779_14775
Prokaryotic type
tRNA splicing ligases
FH779_14775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QLL59274
UniProt:
A0A7H9DVQ5
LinkDB
All DBs
Position
complement(3154712..3156103)
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AA seq
463 aa
AA seq
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MGNKISGKDFIKLGFPKNNSINIAIGQIHRYRKKEKKQTILNEAKEVLLEPEKYIGHGIW
GKVAEGLIKPVEVRLQELKTTRSPFSIFGENEIDEQAKFQLYDALKLPISVKGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSVYDLPASFLKGKSHQLIQILQDHTKFG
MYETHKLKADHEIFERSIFDEIPILKSLKTKAYQQLGTSGGGNHFVEFGIVKLDEVKPEW
NLIPGEYLAVLSHSGSRGLGANIAKYYTYLAAKQCPLPKQVQHLAWLDLGTHDGQEYWAA
MNLAGDYAKACHDDIHRRIAKAIGKRIVFNIENHHNFAWKEMVDGTERIVHRKGATPAGE
GVLGIIPGSMTANGYIVEGLGNESSINSASHGAGRKMSRAKCKSTITKSFMNAQLKDAEI
ELIGGSVDEAPFAYKNIKTVMNLQTELVKVLGTFTPKIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaaatctctggaaaggacttcataaaattaggctttccaaaaaataattcg
atcaatattgcaattgggcaaattcatcgatacagaaaaaaagaaaagaaacaaacgatt
ctcaacgaagcaaaagaagttttactcgaaccagaaaagtacattggtcacggaatttgg
ggaaaagttgcggaaggattgataaaaccagttgaggttagattacaagaattgaaaacg
acgcgttcgcctttttcgatttttggtgaaaatgaaattgatgaacaagcaaaatttcaa
ttgtatgacgcgttgaaattgccgatttcggtaaaaggcgctttgatgccagatgcacat
tcaggttatggattgccgattggtggcgttttggcgacggataatgcggtgattccgtat
ggagttggtgtggatattggttgtagaatgagtctttcggtttacgatttaccagccagt
tttttgaaaggaaaatcgcatcaattgattcagattttgcaagatcataccaaattcgga
atgtatgaaacgcataaattaaaagctgatcacgaaatttttgaacgttctatttttgat
gaaattccaatcttgaaaagtttgaaaacaaaagcttatcaacaattgggaacttcgggc
ggagggaatcattttgttgagtttgggattgtaaaattagacgaggtaaaaccagaatgg
aacttgattccaggtgaatatttggctgttttatcgcatagtggttcgcgtggtttgggt
gcaaatattgcaaaatattacacatatttggcggcgaaacaatgtccgcttccgaaacaa
gttcagcatttggcttggttggatttgggtacgcacgatggacaagagtattgggctgcg
atgaatttggcaggagattatgcaaaggcttgtcacgacgatattcaccgaagaattgcg
aaagctataggaaaacgtatcgtttttaacatcgaaaatcatcacaattttgcgtggaag
gaaatggttgatggaacggaacgaattgttcatcgcaaaggtgcaacgccagctggagaa
ggagttttaggaattatcccaggttcgatgaccgcgaacggttatattgtcgaaggattg
ggaaatgaatcgagtattaattcggcttcgcatggtgcgggacgaaaaatgtcacgtgca
aaatgtaaatcaacgattaccaaaagctttatgaatgcacaattgaaagatgcagaaatt
gagctgataggaggaagtgttgatgaagcgccatttgcgtataaaaacatcaaaacggtg
atgaatttacaaaccgaattagtgaaagtgttgggaacttttacgccgaaaattgtacga
atggataaataa
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