Empedobacter falsenii: FH779_16380
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Entry
FH779_16380 CDS
T06702
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
efal
Empedobacter falsenii
Pathway
efal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
efal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FH779_16380 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
efal03400
]
FH779_16380 (mfd)
Enzymes [BR:
efal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FH779_16380 (mfd)
DNA repair and recombination proteins [BR:
efal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FH779_16380 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QLL59563
UniProt:
A0A7H9DWH7
LinkDB
All DBs
Position
complement(3504675..3508043)
Genome browser
AA seq
1122 aa
AA seq
DB search
MEQKTIHNVFSLYDSSDFVQKLIVNFKNNPQHKVNIKGFLGSGLSILTGHLYDRVARPTI
LIFDDKEEAAYVLNDLETLFDKEQILFFPSSYKRPYEIEEVNNANVVIRTEVLNVLSHSK
RPKIVVTYAEALSEKVVTKKALSTNTLKVKVGNDLGIDFLTEVLSSYNFHRVDFVSEPGE
FSIRGGIIDVFSFSNEHPYRISLFGDEVETIRTFDIENQLSIATTKEITIIPNLESKSIN
EKRESFLEYISKDSLIIAKNISVLAKQITKNFEQAENAFAELKGEIKQAEPNQLFLNKNA
FLQQISSFGVIECSMKSYFETVEEIESPFKPQPSFNKQFELLIDDLNEHKNEGFKNALIC
SNENQIKRFEEIFDDIGKEVSYIPVLGSIYQGFIDEEIKLTCYTDHQIFGRYHKFNLRNS
FSKKEAITLKEINSLQVGDFVTHIDYGIGKFAGLVRLNNNGVTQESIKLIYQNNDILYVN
IHSLHKIAKFRGKDGAEPKISKLGSPAWKNLKNKTKAKVKEIAFDLIKLYAKRRARKGFA
YSPDTYLQNELEASFIYEDTPDQYKATQDVKADMESERPMDRLVCGDVGFGKTEVAIRAA
MKAAVDGKQVAVLVPTTILAFQHFKTFSERLRDLPVKVAYLNRFVTGAKKKAVLDGLKSG
QVDIVIGTHQLVNPKIEYKDLGLLIVDEEHKFGVGVKDKLKTLRENIDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLVGFNEEIFRDAIMYEMQRGGQVYIIHNRVQSL
KDIAGMVQRLVPDARVAIGHGQMDGKELEAVLLDFIDGRYDVFVSTTIIESGLDVPNANT
ILINDAQNFGLADLHQMRGRVGRSNRKAFCYLVAPPLSVLTDEARKRLQAIEQFSDLGSG
FNIAMKDLEIRGAGNLLGAEQTGFMMDIGFETYQKILNEAIEELKETDFKDLFEDQKSGE
VKSYVSDVQIDSDLQIMFPDEYIESSEERLLLYKELADIETETDLQTFKNNLIDRFGKLP
IEAENLLESIQLKWISKKLGFERLVMKNGILLAYFINKPQSEFYQSEEFRLILNYVQNNP
KNISFKEKSPKKGEEYPTLLVRFEHIKTVHEALQNLQNLLIH
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
ttggaacagaaaactattcacaacgtttttagcttatacgattcttcagatttcgtacag
aagcttattgtcaattttaaaaataatccacagcataaagtcaatatcaaaggtttttta
ggttcaggattgagtattttaacgggtcatttatatgatcgtgttgcgcgaccaacgatt
ctaatttttgatgacaaagaagaagcggcttatgtgttgaatgatttggaaactttgttt
gataaagaacaaattctatttttcccgtcatcttacaagcgtccttacgaaattgaggaa
gtaaataatgcgaatgttgtcatcagaacagaggttttaaatgtgttatcgcattcgaaa
cgaccaaaaattgtggtgacgtacgcagaagccttgtctgaaaaagtggtaacaaaaaaa
gcgctttctacgaatacgcttaaagtaaaggttgggaatgatttggggattgatttctta
acggaagttttatcctcttataattttcatcgtgttgattttgtttctgagccgggagaa
ttctcgattcgtggaggaattatagatgttttttcgttttcgaatgaacacccttatcga
atttcgttgtttggagatgaagttgaaaccatcagaacgtttgatatcgagaatcaattg
tctattgcaacgaccaaagaaattacgattattccgaatcttgaaagtaaatcgattaat
gaaaagcgagagagttttttagaatatatttcgaaggatagtttaattatcgccaaaaat
atttctgttttagcaaaacaaattaccaagaattttgaacaagctgaaaatgcttttgct
gaattaaaaggagaaattaaacaagcagaaccgaatcaattatttttgaataaaaatgct
tttcttcaacaaatttcatcttttggagtgattgaatgttcgatgaaatcttattttgaa
acagttgaagaaatagaatcaccattcaaacctcaaccaagttttaacaaacaattcgaa
ttactaattgatgatttgaatgaacacaaaaacgaaggtttcaaaaatgcactgatttgc
tccaatgaaaatcaaatcaaacgttttgaagaaatttttgatgatattggaaaagaagtt
tcttacattccagttttgggttctatttatcaaggtttcattgatgaagaaatcaaatta
acatgttataccgatcatcagatttttggacgttatcataaattcaatcttcgaaattca
ttttccaaaaaagaagcgattacgctaaaggaaatcaattcgttgcaagttggagatttt
gtgacgcatatcgattacggaattggaaaatttgctggtttggtaagattgaataataat
ggcgtaacgcaagaatcaatcaaattgatttatcaaaataatgatattctgtacgttaat
attcattcgttgcataaaattgcgaagtttagaggaaaagatggcgctgagccaaaaatc
tcgaaacttggttcaccagcttggaaaaatttaaagaataaaaccaaagctaaagtaaaa
gaaattgccttcgatttgattaaattatatgcgaaacgtcgtgctagaaaaggcttcgcg
tattctcctgatacatatttacaaaatgagttggaagcttcttttatttatgaagatacg
cccgatcagtacaaagcgacgcaagatgtgaaagctgatatggaatctgaacgccctatg
gatcgcctggtttgtggtgatgtaggtttcgggaaaacggaagtcgcgattcgtgcggcg
atgaaagctgcagtagatggaaagcaagttgctgttttggttccaacaacgattttggct
tttcaacatttcaaaacattttcagagcgtttacgagatttgcctgtgaaagtagcttat
ctcaatcgatttgtaacaggagcaaagaaaaaggccgttttagatggtttaaaatctggt
caagttgatattgtgattgggacgcatcaattggttaatccaaaaattgagtacaaagat
ttgggattattaattgtggatgaagagcataaatttggtgttggtgtaaaagataaattg
aaaacacttcgcgaaaatattgatacattaaccttgacagcgacgccaattccgcgtaca
cttcaattttcgttgatggctgctcgagatttgtcggttatcaaaactcctccaccaaat
agacaacctgtcgatacacaattggttggtttcaatgaagagattttccgtgatgcgatt
atgtacgaaatgcaacgtggtggacaagtttatatcattcacaatcgtgtgcaatcgttg
aaagatattgcaggaatggtgcaacgattagttcctgatgcgcgtgtggcgattggtcat
ggacagatggatgggaaagaattagaggctgttttgctcgattttattgatggtcgatat
gatgtttttgtgtcaacaacaattatcgaatctggtttggatgttccgaatgcgaatacg
attttaattaatgatgcgcagaattttggtttggcggatttgcatcaaatgcgtgggcgt
gttggtcgtagtaaccgcaaagcgttctgttatttggttgcgccgccactttcggtttta
acggacgaagcgcgtaaacgtttgcaagcaattgagcagttttctgatttaggatcagga
tttaatattgccatgaaagatttagaaattcgtggagcgggaaatcttttaggtgcggag
caaacaggatttatgatggatatcggtttcgaaacgtatcaaaaaatcttgaatgaagcg
attgaagaattgaaagaaacagatttcaaagatttgttcgaagatcaaaaatcgggagaa
gtaaaatcctatgtttcggatgtacagattgattcggatttacaaattatgttcccagat
gaatacattgaaagttcggaagaacgtttgttgttatacaaagaattagctgatatcgaa
actgaaacagatttacaaacgtttaaaaataatttgattgaccgcttcggaaaattacca
attgaagccgaaaatttattggaatcaattcaattgaaatggatcagtaaaaaattaggt
ttcgaacgcttggtgatgaaaaatggaattttgttggcttattttattaataaaccacaa
agcgaattttatcagtcagaagaatttagattaattttaaattacgttcaaaataaccct
aaaaacatcagttttaaggaaaaatcacccaaaaaaggagaagagtatccaacattgtta
gtacgatttgaacatattaaaactgtgcatgaagcactgcaaaatctacaaaatttatta
attcattaa
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