Enterococcus faecium Aus0085: EFAU085_02090
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Entry
EFAU085_02090 CDS
T02788
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
efau
Enterococcus faecium Aus0085
Pathway
efau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EFAU085_02090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efau03019
]
EFAU085_02090
03016 Transfer RNA biogenesis [BR:
efau03016
]
EFAU085_02090
Enzymes [BR:
efau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EFAU085_02090
Messenger RNA biogenesis [BR:
efau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EFAU085_02090
Transfer RNA biogenesis [BR:
efau03016
]
Prokaryotic type
tRNA degradation factors
EFAU085_02090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
S1_RRP5
Fucose_pyrophosphorylase
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
AGS76044
LinkDB
All DBs
Position
complement(2101633..2103990)
Genome browser
AA seq
785 aa
AA seq
DB search
MTKETIKEKILFFMESSRKRSFSMEEIAEGLGFQKSDDFKLLVQTIAQMEREQSIVFNKK
GKVKLPLKPILVEGTFRANERGFGFVTIDPEEDDIYIPKEATGFAMDGDTVAIDIMKRAN
TDMDRGAEGKVVEIRDRATTQLAGEFVAYSDEEIQETDLYGVVIPKDRKLNQFKVYAAAE
GVRPVDGSIVLIELTHYPEKGYATSLEGIIKQVIGHKNDPGMDILSIVVANGIPTKFPDD
VLSEADEVPDQISEKDIVGRRDLRDQLIVTIDGEDAKDLDDAVTVKKLENGNYFLGVHIA
DVSYYVTQGSQLDREAYERGTSVYLTDRVIPMIPQRLSNGICSLNPHVPRLTMSCEMEID
PNGQVVSHEIFPSVIQTTERMTYTAVNQILEDQDEETMQRYAQLVPMFQEMGELHRILEM
MRIKRGAISFEDREAKILVDAEGHPNDIQLRSRGIGERLIESFMLAANETVAEHYNKLNL
PFIYRIHEQPKEEKMQRFFDFASALGILVRGTKGTITPKDLQHVIEGVEDKPEAAVINTM
LLRSMQQARYSEDNFGHYGLAADYYTHFTSPIRRYPDLIVHRLIRSYSEDKSESNQSSWA
AELPEIADHSSKMERRAVETEREVDSMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNT
VEGLIHINELKQDYFHFVENHLALVGERTGLTFKIGQKVRVKVVKADPDERAVDFELVSA
EEVTALERPKARNGKSGKREGKQAGKRSEKNGKKNKRYSDSKQTFGKKKGKKPFYKGVKK
KKKKK
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagaaacaataaaagagaaaattctctttttcatggaaagcagtcgcaaacgt
agtttttctatggaagaaatcgctgaaggtctaggctttcaaaaaagcgatgattttaaa
ttactagtacaaacgattgctcaaatggaaagagaacagagtatcgttttcaataaaaaa
ggaaaagtcaaacttcctttaaaaccgatcttggtcgaagggacatttcgggcaaatgaa
cgaggatttggatttgtaacgattgatcccgaagaagatgatatctatatcccgaaagaa
gcgactggctttgcaatggatggggataccgtagcaattgatatcatgaagcgagcaaat
acagatatggatcgcggagcagagggaaaagtagtggagattcgagaccgagcgactact
cagttagccggagaatttgttgcttattcagacgaagagatacaggaaacggatctttat
ggtgtggtcatcccgaaagatagaaagcttaaccaattcaaagtgtatgcagcggcagag
ggagttcgtccagttgacggaagtattgtattgatcgaactgacccattaccctgaaaaa
gggtatgcaactagtttagaagggataatcaagcaagtgattggtcataagaatgaccct
ggcatggatatcctctcgattgtcgtggctaacggtattcctacaaaatttcctgatgat
gtgttatctgaggcagatgaagttccagaccagatcagcgaaaaggatattgttggacgc
agagatttaagagatcagctcatcgttacgattgatggagaagatgcaaaagatctagat
gatgcagtgacggtcaaaaaattagaaaatggtaattattttcttggagtacacattgca
gatgtatcttactatgtgacgcaaggcagtcaactggacagagaagcatacgaaagagga
acaagtgtctatttgaccgatcgagtgattccgatgatcccacaacgtttatccaatggt
atctgttcattgaatccccatgttccacgactcaccatgagttgtgaaatggagatcgat
ccaaatggacaagttgtctctcatgagatttttccaagtgtgatccaaacaacagaacgg
atgacctacacagctgtcaatcaaatcttagaagatcaagatgaagaaacgatgcaacgt
tatgctcagctcgtgcctatgttccaagaaatgggtgaattgcatcgaatccttgaaatg
atgcgaatcaaacgtggagcgatttcttttgaggatcgtgaagcgaagatccttgttgat
gctgaaggacacccaaatgatatccagctaagaagcagagggataggtgaacgcttgatc
gaatcctttatgcttgctgccaacgaaacggtagctgaacattataataaattaaatctt
ccgtttatttatcgaatccatgaacagccaaaagaagaaaaaatgcagcgcttctttgat
tttgcttcagctttgggcattctggtccgaggaacgaaaggaacgatcacaccaaaagat
ttacagcatgtgatcgaaggagtagaagacaaaccagaagctgcagttatcaatactatg
ttgctaagaagcatgcaacaagcacgctattcagaagacaattttgggcattatggctta
gcggcagattactacacacactttacatctcctattcgacgctatcccgatctaatcgtc
catcgtctgatccgttcttacagtgaagataaaagtgaaagcaatcaaagttcgtgggct
gcggaacttcctgaaattgcagatcatagttctaagatggaacgtcgtgcagtagaaaca
gaacgtgaagtagattccatgaagaaagcagaattcatgatggacaaagtgggagaagaa
ttcgatgggatcatcagctctgttgtgaaattcggcctgtttatcgaactgccgaataca
gtagaaggattgatccatatcaatgaattgaaacaggactacttccattttgttgaaaat
catttagctcttgtaggtgaaagaactggtctgacttttaaaatcggacaaaaagtgcgc
gtaaaagtagtcaaagctgatccagatgaacgagcagtggattttgaactcgtttccgca
gaagaggtcactgcgttggaacgtccaaaagcacgcaatggaaaatctggaaaacgagaa
ggaaaacaagcaggcaaacgctcagaaaaaaatggcaagaagaacaaacgatatagtgat
agtaagcaaacgttcggtaagaaaaaagggaaaaagccattttacaaaggtgtcaaaaag
aagaaaaagaaaaaataa
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