Enterococcus faecium Aus0085: EFAU085_02690
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Entry
EFAU085_02690 CDS
T02788
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
efau
Enterococcus faecium Aus0085
Pathway
efau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
efau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EFAU085_02690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
efau03400
]
EFAU085_02690
Enzymes [BR:
efau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EFAU085_02690
DNA repair and recombination proteins [BR:
efau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EFAU085_02690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AGS76642
LinkDB
All DBs
Position
complement(2719612..2723133)
Genome browser
AA seq
1173 aa
AA seq
DB search
MDIIQLVGKDPQVKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLY
YANQLAEDLQHVIPQDQIHLFPVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLP
VASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSII
DIYPLTTTYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIE
QMQKMLEKRLAATTEEADREFLQDYFGQLTSSWQAGVPTEEAKFYSDLLYQESVTILDYF
PSNSLLVVDDYQRIMETNREIEREAAEWQTQKISELRVFSEQTFSADIQKIVQKEKFTTT
FFSLFQKGMGNLRFQAIHNFQYRTMQQFFGQMPLLKTEMDRWRKQKQTVVIFIPTKDRIR
KAEQMLRDEDILVVETEKNALIRGQVQLVEGALQAGFELPQEKIVAITEKEIFQKTTKKQ
TRRQTVTNAERLKSYNELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDDKL
FIPVTQLNLIQKYVASEAKAPRINKLGGSEWTKTKRKVSSKIEDIADDLIKLYAARESEK
GYAFGPDDAYQKEFENAFPYSETDDQLRSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVAL
RAAFKAIKESKQVAFLVPTTILAQQHYETMLERFEGFPVNIGLLSRFRTRKQQKETIEQL
RTGQVDIVVGTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRV
ETIEQKVEEIQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPN
ANTLFVENADYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSRKQGKNSQVEKTTVE
IDLGVDAYLPETYVADQRQKIEIYKRIRELDSQEMLDELEDDLLDRFGEYPEEVAHLLTI
GQIKMDGDRALLETIRKQEAHIVFTLSKVGTKRYSVEQLFEALTATKLKASLGVEKEQMV
IRLTIPNQMEEAVWLQEIQKFVKALREQKYLSA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggatattattcaattagtcggaaaagatccgcaagtaaaagaatgggtcagcaattta
gaagaaaaaatgcctagacaactaatcacaggattagcgggctcagcgaaaacacttcta
tttgctcgagcgtttaagaaaacaaataaaaacatgattattctgatgccaaatttgtat
tatgcgaatcagttagcagaagatctgcaacatgtgattccgcaagatcagatccattta
tttccagtggatgaagtgctttctgctgaaatggccttttcttctccagaagcgcgaggc
gagagagttgcaacgcttaacgcacttcaagaaaaaaaagcaggtatctatttgttgcca
gtcgcatctttgcacaaacgactgccgaataagaaaacttggctacaggcgcaattgaat
tggcatattggtgatgagatagacgtggaaaatcttcctcgccaattgactttgatgggc
tatgtacgagaagagatggtcgcaaaaccgggagaattcagtattcgaggaagcattatc
gatatttacccgttaacgacaacctatcctgttcgtgtagaactatttgatgtagagata
gattctatgcggtattttgaagcagaaacacaacgctcaatcgaaaaaacggaagaaatc
tgggtttccccaacgagtgaacaagtctacggaccagaggatctagaacatggaatagag
caaatgcaaaaaatgctagaaaaacggcttgctgcgaccacagaagaagcagaccgcgag
tttttgcaagattacttcggtcagctgacttcaagctggcaagcaggtgtcccgacagaa
gaagcaaaattctactcagatcttctttaccaagaatctgtgacgatcttggattatttc
ccttcaaatagtttactagtcgttgatgattatcagcgaatcatggaaacaaatcgggaa
atcgaaagggaagcggcagaatggcagactcaaaaaatcagcgaattgcgggtgttttct
gagcagacattttcagcagatatacaaaaaatcgtgcagaaggaaaagttcaccacaacc
tttttctcactcttccaaaaagggatgggaaatcttcgtttccaagcaatccataatttt
caatatcggacgatgcaacagttcttcggacaaatgccattgctgaaaacagaaatggac
cgttggcgcaagcaaaaacagactgttgtgatctttattccgacaaaggacagaatacgc
aaagcagaacaaatgcttcgagatgaagacatattagtagtagaaacagaaaaaaatgca
ttgatcagaggacaggtacaattagttgaaggagctttgcaggctggttttgaacttcct
caagaaaaaatagtagctatcacagaaaaagaaattttccaaaaaacgacgaaaaaacaa
acgagacgtcaaacagtaacaaacgcagagcgattgaaaagctataatgagttaaaagca
ggagattacgttgtccatgccaatcatggtatcgggaaatacattgggatggaaacgcta
gaagtagatggcgttcaccaagactatatgactattttgtatcaaaacgacgacaaactg
tttattcctgttactcaactgaatctgatccaaaaatatgtcgcctctgaagccaaagcg
cctcgcatcaataagctaggcggaagtgaatggacgaaaaccaagcgaaaagtctcttca
aaaatcgaggatatcgctgacgatctaatcaaattatatgccgcaagagagtcagaaaaa
ggatatgcttttggacctgatgacgcctaccaaaaagaattcgaaaatgccttcccctac
tctgaaactgatgaccagttgagaagtgcagcggagatcaaacgggatatggaaaaagaa
aaaccaatggatcgactactcgtaggtgatgttggttatgggaaaacagaagtagcgctt
cgagcggcctttaaagcgataaaggaaagcaaacaagtagcctttttagttccaacaacg
atcttggcacagcagcactatgaaacgatgctggaaagatttgaaggtttccccgtaaat
atcgggctattaagtcgtttcagaacaagaaagcaacaaaaagaaaccatcgaacaactg
cgtacaggtcaagttgatattgttgtaggaacccaccgaattttgtcaaaagatattgaa
tttagcgatttgggtctactgatcattgacgaagaacaacgttttggtgtaaaacataag
gaacgattgaaacagttacgtgcacaagtggatgttttgactctgactgcaacaccgatt
ccgagaactttgcatatgtcgatgttaggcgtgcgggatctttcagtaatcgaaacaccg
cctgcgaatcgttatccgatccaaacgtatgttatggaaaaaaatcctggggctattcgc
gaagcaatccatcgagaaatgggacgaggtggacaagtattctatttatataatcgggta
gaaacgatcgaacaaaaagtagaagaaatccaagaactcgttccggaagcacggatcggt
tatgctcatgggcaaatgacagaggcgcaattagaaaatacgctttttgaatttattgaa
ggtcaatatgatgttcttgtcactacaaccatcattgaaacaggagtagatatcccgaac
gcaaatacgttgttcgttgagaacgctgattatatgggattatccacgttataccaattg
cgagggcgggtaggaagaagcagccgtgtcgcatatgcttactttatgtatgagcagcag
aagatccttaacgaagtcagtgaaaaacgtcttcaggcaatcaaagattttacagaactg
ggatctggattcaagattgcgatgcgggatctttccattcgcggtgcaggtaatctctta
ggtgctcagcagcatggatttattgatgcagtcggtttcgatatgtattctcaaatgcta
agcgaagctgtttctcgtaaacaaggaaagaatagtcaagtggagaagaccactgttgag
atcgacctcggtgtcgatgcgtatctacctgaaacatacgtggcagatcaacggcagaaa
atcgagatctataaacgaattcgtgaacttgattcgcaagaaatgctagatgaactagaa
gatgatctgctcgaccgttttggagaatatccagaagaagtagcacatctcttgacaatt
gggcagatcaaaatggatggcgatcgagcgctcctagaaacgataaggaaacaggaggcg
catatagtctttactctaagtaaagttggaacaaaacgctatagtgtggaacagttattc
gaagcactgacagcgacaaaactaaaagccagtctaggcgttgaaaaagaacagatggtg
atacgcttgacgatccccaaccaaatggaagaagcagtatggcttcaggaaatccaaaag
tttgtcaaagcgttgcgtgagcaaaaatatctgtcagcgtag
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integrated database retrieval system
