Escherichia fergusonii: EFER_0068
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Entry
EFER_0068 CDS
T00811
Symbol
hepA
Name
(GenBank) RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
efe
Escherichia fergusonii
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
efe03021
]
EFER_0068 (hepA)
Transcription machinery [BR:
efe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
EFER_0068 (hepA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CAQ87654
UniProt:
B7LVT0
LinkDB
All DBs
Position
complement(69446..72352)
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AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT
ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL
AGNKLSNDELNMLGEMIGEQDIEPLLQAANSNSEDAQSARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD
NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT
EGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAM
NLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTP
VRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR
ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaattgggacttgga
accgttgtcgcggtggatgcgcgaactgtcactttacttttcccatctactggtgaaaac
cgtctgtacgcacgcagtgattcccccgtgacccgcgtgatgttcaaccctggtgatacc
attaccagccatgacggctggcagatgcaagtcgaagaagtaaaagaagaaaatggcttg
ctgacctatatcggtactcgcctggatactgaagagtccggcgtagccctgcgtgaagtt
ttccttgatagcaaactggtgttcagcaaaccgcaggaccgtctgtttgccgggcagatt
gaccgtatggaccgctttgcgctgcgttatcgcgcacgtaaatattccagcgaacagttc
cgtatgccgtacagcggcctgcgcggtcagcgtaccagtctgatcccgcatcagctcaac
atcgctcatgatgttggccgccgccatgcgccgcgcgtcctgctggctgacgaagtgggt
ttagggaaaaccattgaagccgggatgatcctgcatcagcaactgctctctggcgctgct
gaacgtgtactgattatcgtcccggaaaccttacagcatcagtggctggtagaaatgctg
cgccgtttcaacctgcgctttgcgctgtttgatgatgagcgttatgccgaagctcagcac
gatgcttacaacccgttcgacaccgaacagctggtcatttgctcgctggattttgcccgt
cgtagcaaacagcgtctggaacatctctgtgaagccgaatgggacctgctggtggtcgat
gaagcgcatcacctggtgtggagcgaagatgcgccgagccgtgaatatcaggccattgaa
caactggcagagcatgtgcccggcgttctgctgctgactgcgaccccggaacaactgggg
atggaaagccacttcgcccgtctgcgcctgctggacccgaaccgtttccacgatttcgcg
cagttcgttgaagagcagaaaaattatcgtccggtagcagatgccgttgccatgctgctg
gcaggtaacaaactcagcaatgacgaactgaacatgctcggtgagatgatcggcgagcag
gatattgagccgttactgcaggcggcaaacagcaacagcgaagatgcccagagcgcccgt
caggaactggtttccatgctgatggatcgccacggcaccagccgcgtgctgttccgtaac
acccgtaacggcgttaaaggcttcccgaaacgcgagctacacactattaaactgccgctg
ccgacgcagtatcagacggcgattaaagtgtccggcattatgggcgcacgtaaaagtgcg
gaagaccgcgctcgcgatatgctctacccggagcgtatttatcaagaatttgaaggcgat
aacgccacctggtggaacttcgacccgcgcgttgagtggctgatgggctacctgaccagc
catcgctcacagaaagtgctggtgatctgcgctaaagccgctaccgcgctgcaactggag
caggtactgcgcgagcgtgaaggtatccgcgctgcggtgttccacgaaggcatgtcgatt
attgagcgtgaccgcgctgcggcatggtttgccgaagaagacaccggcgcgcaggtgctg
ctgtgttcggaaattggttctgaagggcgtaacttccagttcgccagccacatggtaatg
ttcgatctgccgttcaacccggatctgctggagcagcgtattggtcgtctggatcgtatc
ggtcaggcacacgatattcagatccatgtgccttatctggaaaaaaccgctcagtcggta
ctggtgcgctggtatcacgaaggtctggatgcattcgagcacacctgcccgaccggacgc
actatctacgatagcgtgtataacgatctgattaactacctggcctcaccggatcaaacc
gaaggctttgacgatctgatcaaaaactgccgcgagcagcacgaggcgttgaaggcacag
ctggaacagggtcgtgaccgcctgctggagatccattccaacggtggcgaaaaagcgcag
gcattagctgaaagcattgaagagcaggatgacgataccaacctgatcgccttcgccatg
aacctgttcgatattatcggtatcaatcaggacgatcgcggcgacaacatgatcgtgctg
acgccgtccgatcatatgctggtgccggacttccctggcctgtcggaagatggcatcacc
attaccttcgaccgtgaagtggcgctggcgcgtgaagatgcgcagtttattacctgggag
catccgctgatccgcaacggtctggatctgatcctctctggcgataccggtagcagcacg
atttcactgttgaaaaacaaagcgttgccggtaggtacgctgttggtggagctgatttat
gtcgttgaagcccaggctccgaagcagttgcagctcaaccgcttcctgccaccgacgccg
gtacgtatgctactggataaaaacggcaacaacctggcagcgcaggtggagtttgaaacc
tttaaccgtcagcttaacgcggttaaccgccacactggcagcaagctggttaatgccgtg
cagcaggatgttcacgctatccttcagctgggtgaagcgcagatcgagaaatctgcccgt
gcattgattgatgcagcacgtaacgaagccgacgaaaaactgtctgccgagctgtctcgt
ctggaagctctgcgcgcagtgaacccgaacattcgtgacgatgaactgaccgccattgag
agcaaccgtcagcaggtaatggaaagcctggatcaggcaggttggcgtctggatgccctg
cgtttgatcgttgtgacgcatcagtaa
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