Escherichia fergusonii: EFER_0559
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Entry
EFER_0559 CDS
T00811
Symbol
ybbB
Name
(GenBank) tRNA 2-selenouridine synthase, selenophosphate-dependent
KO
K06917
tRNA 2-selenouridine synthase [EC:
2.9.1.3
]
Organism
efe
Escherichia fergusonii
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
efe03016
]
EFER_0559 (ybbB)
Enzymes [BR:
efe01000
]
2. Transferases
2.9 Transferring selenium-containing groups
2.9.1 Selenotransferases
2.9.1.3 tRNA 2-selenouridine synthase
EFER_0559 (ybbB)
Transfer RNA biogenesis [BR:
efe03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
EFER_0559 (ybbB)
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Paralog
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GFIT
Motif
Pfam:
Rhodanese
T2SSE
AAA_18
AAA_16
AAA_23
DUF3333
AAA_22
AAA_7
Rad17
Motif
Other DBs
NCBI-ProteinID:
CAQ88106
UniProt:
B7LJH5
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All DBs
Position
complement(580595..581689)
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AA seq
364 aa
AA seq
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MQERHTEQDYRALLIADTPIIDVRAPVEFEQGAMPAAINLPLMNNDERAAVGTCYKQQGS
DAALALGHKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQRSHIVQRWLHEAGIDYPL
VEGGYKALRQTAIQATIELAQKPIVLIGGCTGCGKTLLVQQQPNGVDLEGLARHRGSAFG
RTLQPQLSQASFENLLAAEMLKTDARQELRLWVLEDESRMIGSNHLPECLRERMTQAAIA
VVEDPFEIRLERLNEEYFLRMHHDFIHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNE
LATRLDAALTTQLATGSTDGHLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEW
VKAQ
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagagacacacggagcaggactatcgtgccctgctgattgctgatacgcccatt
attgatgttcgcgcccctgtcgagtttgagcaaggcgcaatgcccgccgctattaatctg
ccgttaatgaataatgatgaacgcgccgcagttggcacctgctataaacagcaaggctca
gatgcagcgctggcgctggggcataaactggtggcgggtgaaattcgtcagcagcgcatg
gatgcctggcgggcagcgtgcctgcaaaatccgcaaggtattctctgctgcgcccgtggc
ggccaacgttcgcatattgtgcaacgctggctgcatgaagcggggattgattatccgcta
gtggaaggcggttataaggcactgcgccagacagcgattcaggcgaccattgaactggca
caaaaaccgatagtgctgattggcggttgtaccggctgcggtaaaacgctgttagtgcaa
caacagccgaacggtgttgatctggaagggctggcgcgtcatcgcggttcggcgtttggt
cgcacgttgcaaccgcaacttagccaggcgagttttgaaaatctgctggctgccgaaatg
ctaaaaaccgacgcccgtcaggagctacggctgtgggtgctggaagatgaaagccggatg
atcggttcgaatcacctgccggaatgcctgcgcgagcgaatgactcaggcggcgattgcg
gtggtagaagatccgtttgagatccgtcttgaacgcctgaacgaagagtatttcttgcgt
atgcatcatgattttatccatgcgtacggcgacgaacagggctggcaggagtattgcgaa
tacctgcatcacggactttcggcgattaagcgtcggctggggctacaacgctataacgaa
ctggctacaaggctggatgcggcgctgacaacgcaactcgcaaccggtagcaccgacggt
catctggcctggctggtgccgttacttgaagaatattacgacccgatgtatcgctatcag
cttgagaaaaaagcggaaaaagttgtctttcgcggtgagtgggcagaagtggcggagtgg
gttaaggcgcagtga
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