Escherichia fergusonii: EFER_1622
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Entry
EFER_1622 CDS
T00811
Symbol
ydbK
Name
(GenBank) putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein
KO
K03737
pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:
1.2.7.1
1.2.7.-]
Organism
efe
Escherichia fergusonii
Pathway
efe00010
Glycolysis / Gluconeogenesis
efe00020
Citrate cycle (TCA cycle)
efe00620
Pyruvate metabolism
efe00650
Butanoate metabolism
efe00720
Other carbon fixation pathways
efe01100
Metabolic pathways
efe01110
Biosynthesis of secondary metabolites
efe01120
Microbial metabolism in diverse environments
efe01200
Carbon metabolism
efe01210
2-Oxocarboxylic acid metabolism
Module
efe_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
EFER_1622 (ydbK)
00020 Citrate cycle (TCA cycle)
EFER_1622 (ydbK)
00620 Pyruvate metabolism
EFER_1622 (ydbK)
00650 Butanoate metabolism
EFER_1622 (ydbK)
09102 Energy metabolism
00720 Other carbon fixation pathways
EFER_1622 (ydbK)
Enzymes [BR:
efe01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.7 With an iron-sulfur protein as acceptor
1.2.7.1 pyruvate synthase
EFER_1622 (ydbK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POR_N
POR
EKR
PFOR_II
Fer4_7
Fer4_16
Fer4
Fer4_21
Fer4_10
Fer4_9
Fer4_6
Fer4_2
Fer4_8
Fer4_17
Transketolase_C
Fer4_18
Fer4_4
Fer4_15
FlgM
Motif
Other DBs
NCBI-ProteinID:
CAQ89138
UniProt:
B7LRU6
LinkDB
All DBs
Position
1666984..1670508
Genome browser
AA seq
1174 aa
AA seq
DB search
MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSE
AGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIF
GDHSDVMAVRQTGCAMLCAANVQEAQDFALISHIATLKSRVPFIHFFDGFRTSHEINKIV
PLADDTILELMPQAEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVE
QAMNDFAAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLKVRL
YRPFSAKHLLQALPDSVRIVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVI
GGRYGLSSKEFGPDCVLAVFAELNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEA
LFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYL
ISQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARF
YVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVER
NWQALALARESVEEIPLQPVNPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALP
PDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPAS
LHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEE
KINYDYFLNLPEIDRSKLERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRML
IANATGCSSIYGGNLPSTPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRL
LDQFADKIPAKLLTALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLI
GGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRK
ARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLAL
SHDQMRQLTATGFWPLYRFDPRRAEEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQP
EVAEQLWKDAAADLQKRYDFLAQMAGKAEKSSSE
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgatcacaattgacggtaatggcgcggtagcttcggtggcgtttcgcaccagtgaagtt
atcgccatctaccctattacccccagttccacgatggcagaacaggctgatgcatgggcc
ggaaacggcttgaaaaacgtttggggagacacaccacgcgtggttgaaatgcagtcggaa
gcgggtgctatcgctaccgtgcatggtgctttgcaaactggcgccctctcaacatcgttt
acgtcatcgcagggtttgctgctgatgatcccaacgctgtacaaactggcaggcgaactg
acgccgtttgtcctgcatgttgcggcacgtaccgttgccacacatgcactctctattttt
ggcgatcattccgacgtcatggcggtgcgccagacgggttgcgcgatgttgtgtgcagca
aacgtccaggaggcgcaagactttgctctcatttcgcacattgcgacacttaaaagtcgc
gtgccatttattcatttctttgatggtttccgcacctcccacgagatcaataaaattgtc
ccgctggccgatgacactattcttgaactgatgccgcaggcagaaattgatgctcatcgc
gcccgtgcactcaacccggaacatccggtgatccgcggcacgtccgccaatcctgacact
tatttccagtctcgcgaagccaccaacccatggtacaacgcagtctatgaccatgttgaa
caggcgatgaatgatttcgctgccgcgacaggtcgccagtatcagccgtttgagtattac
gggcatccacaagcggaacgggtgattatcctgatgggctctgccatcggcacctgtgaa
gaagtggttgatgaattgctgacccgtggcgaaaaagtcggcgtgctgaaagttcgcctg
taccgccccttctccgccaaacacttactgcaagcattgccggactctgttcggatagtg
gcggtgctggatcgcaccaaagagccaggtgcgcaagcggaacccctgtacctggatgtg
atgaccgcactggcagaagcctttaataatggcgagcgtgaaaccctgccccgtgtcatt
ggtgggcgctatggtctttcatccaaagaatttggcccggactgtgtactggcggtattt
gccgagctcaacgcagctaaaccgaaagcgcgctttacggttggtatttacgatgatgtg
accaatctgtcactgccgttgccggaaaacaccctgccaaactcggcgaaactggaagcc
ttgttttatggtcttggtagtgatggcagcgtttccgcgaccaaaaacaatatcaagatt
atcggtaattccacgccgtggtacgcacagggctattttgtttacgactccaaaaaggcg
ggcggcctgacggtttctcaccttcgcgtgagcgagcagccgattcgctccgcttatctc
atttcccaggctgattttgttggctgccaccagttgcagtttatcgacaaatatcagatg
gctgaacgtttaaaacctggcggcattttcctgctcaacacgccgtacagcgcagatgaa
gtatggtcgcgcttgccgcaggaagttcaggcggtgctaaatcagaaaaaagcgcgcttc
tatgtgattaacgcggcgaaaattgcccgcgaatgtggcctggcggcccgtattaatact
gtcatgcagatggcatttttccatttgacacaaattctgcctggcgatagcgccctggcc
gaattgcagggcgcgattgccaaaagctacagcagcaaaggccaggatctggtggaacgc
aactggcaggctctggcgctggcgcgtgaatcggtagaagaaattccgttgcaaccggta
aatccgcacagtgccaatcgaccgccagtggtttccgatgctgctcctgatttcgtgaaa
accgttaccgctgcaatgctcgctgggcttggcgatgctctccctgtttcggcgctgcca
ccagatggcacctggccgatgggcaccacacgctgggaaaaacgcaatattgccgaagag
atccccatctggaaagaggaactctgtactcaatgtaaccactgcgtcgccgcttgccca
cactcagctattcgcgccaaagtggtgccgcctgaagcaatggaaaatgcccctgccagc
ctgcattcgctggatgtaaaatcgcgtgatatgcgcgggcagaaatatgtcttgcaggta
gctccggaagattgcaccggctgtaacctgtgcgtcgaagtttgcccggcgaaagaccgt
cagaatccagagattaaagccatcaatatgatgtcgcgcctggaacatgtcgaggaagag
aaaatcaattacgattacttcctcaacctaccagaaatcgatcgcagcaaactggaacgt
attgatattcgtacatcgcaactgattacaccgctgtttgaatattcaggtgcttgctcc
ggttgtggcgagacgccgtatattaaattgctgactcagctctatggcgaccggatgttg
atcgctaacgctacgggttgttcttcaatttatggcggtaacctgccctctacaccgtat
actaccgatgccaacggtcgtggaccggcatgggcgaactcgctgtttgaagataacgcc
gaatttggccttggtttccgcctgacggtcgatcaacaccgtgtccgcgtgctgcgtctg
cttgatcaatttgccgataaaatcccggctaaattactaactgcgttgaaatcagacgcc
acaccagaggttcgtcgtgaacaggttgcagctttacgccagcaactcaacgatgttgcc
gaagcacatgaactgctacgtgatgcagatgcactggtggaaaaatcaatctggctgatt
ggtggcgatggctgggcttacgatatcggctttggcggtctggatcatgtattgagtttg
acggaaaacgtcaacattctggtgctggatacgcaatgctattccaacaccggtggtcag
gcgtcgaaagcgacaccgctgggtgcagtaactaaatttggcgagcacggcaaacgtaaa
gcgcgtaaagatcttggcgtcagtatgatgatgtacggtcatgtttatgtggcgcagatt
tctcttggcgcacagctcaaccagacagtgaaagcgattcaggaagcggaagcgtatccg
gggccatcgctgatcatcgcttacagcccgtgtgaagagcatggttacgatctggcactc
agtcacgaccagatgcgccaactcactgccactggcttctggccgctatatcgctttgat
ccgcgtcgtgccgaagaaggaaaactgccgctggcgctggattcacgcccgccgtcagag
gcactggaagaaacgttacttcacgagcagcgtttccgtcgtctgaattcgcagcaacca
gaagtggcagaacagttatggaaagatgctgcagctgatttgcaaaaacgctatgacttc
ctggcacaaatggccggaaaagcggaaaaaagcagttcagagtaa
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