Escherichia fergusonii: EFER_1622
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Entry
EFER_1622 CDS
T00811
Symbol
ydbK
Name
(GenBank) putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein
KO
K03737
pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:
1.2.7.1
1.2.7.-]
Organism
efe
Escherichia fergusonii
Pathway
efe00010
Glycolysis / Gluconeogenesis
efe00020
Citrate cycle (TCA cycle)
efe00620
Pyruvate metabolism
efe00650
Butanoate metabolism
efe01100
Metabolic pathways
efe01110
Biosynthesis of secondary metabolites
efe01120
Microbial metabolism in diverse environments
efe01200
Carbon metabolism
efe01210
2-Oxocarboxylic acid metabolism
Module
efe_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
EFER_1622 (ydbK)
00020 Citrate cycle (TCA cycle)
EFER_1622 (ydbK)
00620 Pyruvate metabolism
EFER_1622 (ydbK)
00650 Butanoate metabolism
EFER_1622 (ydbK)
Enzymes [BR:
efe01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.7 With an iron-sulfur protein as acceptor
1.2.7.1 pyruvate synthase
EFER_1622 (ydbK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POR_N
POR
EKR
PFOR_II
Fer4_7
Fer4_16
Fer4
Fer4_21
Fer4_10
Fer4_9
Fer4_2
Fer4_8
Fer4_6
Fer4_17
Transketolase_C
Fer4_18
Fer4_4
Fer4_15
FlgM
Motif
Other DBs
NCBI-ProteinID:
CAQ89138
UniProt:
B7LRU6
LinkDB
All DBs
Position
1666984..1670508
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AA seq
1174 aa
AA seq
DB search
MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSE
AGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIF
GDHSDVMAVRQTGCAMLCAANVQEAQDFALISHIATLKSRVPFIHFFDGFRTSHEINKIV
PLADDTILELMPQAEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVE
QAMNDFAAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLKVRL
YRPFSAKHLLQALPDSVRIVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVI
GGRYGLSSKEFGPDCVLAVFAELNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEA
LFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYL
ISQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARF
YVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVER
NWQALALARESVEEIPLQPVNPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALP
PDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPAS
LHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEE
KINYDYFLNLPEIDRSKLERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRML
IANATGCSSIYGGNLPSTPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRL
LDQFADKIPAKLLTALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLI
GGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRK
ARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLAL
SHDQMRQLTATGFWPLYRFDPRRAEEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQP
EVAEQLWKDAAADLQKRYDFLAQMAGKAEKSSSE
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgatcacaattgacggtaatggcgcggtagcttcggtggcgtttcgcaccagtgaagtt
atcgccatctaccctattacccccagttccacgatggcagaacaggctgatgcatgggcc
ggaaacggcttgaaaaacgtttggggagacacaccacgcgtggttgaaatgcagtcggaa
gcgggtgctatcgctaccgtgcatggtgctttgcaaactggcgccctctcaacatcgttt
acgtcatcgcagggtttgctgctgatgatcccaacgctgtacaaactggcaggcgaactg
acgccgtttgtcctgcatgttgcggcacgtaccgttgccacacatgcactctctattttt
ggcgatcattccgacgtcatggcggtgcgccagacgggttgcgcgatgttgtgtgcagca
aacgtccaggaggcgcaagactttgctctcatttcgcacattgcgacacttaaaagtcgc
gtgccatttattcatttctttgatggtttccgcacctcccacgagatcaataaaattgtc
ccgctggccgatgacactattcttgaactgatgccgcaggcagaaattgatgctcatcgc
gcccgtgcactcaacccggaacatccggtgatccgcggcacgtccgccaatcctgacact
tatttccagtctcgcgaagccaccaacccatggtacaacgcagtctatgaccatgttgaa
caggcgatgaatgatttcgctgccgcgacaggtcgccagtatcagccgtttgagtattac
gggcatccacaagcggaacgggtgattatcctgatgggctctgccatcggcacctgtgaa
gaagtggttgatgaattgctgacccgtggcgaaaaagtcggcgtgctgaaagttcgcctg
taccgccccttctccgccaaacacttactgcaagcattgccggactctgttcggatagtg
gcggtgctggatcgcaccaaagagccaggtgcgcaagcggaacccctgtacctggatgtg
atgaccgcactggcagaagcctttaataatggcgagcgtgaaaccctgccccgtgtcatt
ggtgggcgctatggtctttcatccaaagaatttggcccggactgtgtactggcggtattt
gccgagctcaacgcagctaaaccgaaagcgcgctttacggttggtatttacgatgatgtg
accaatctgtcactgccgttgccggaaaacaccctgccaaactcggcgaaactggaagcc
ttgttttatggtcttggtagtgatggcagcgtttccgcgaccaaaaacaatatcaagatt
atcggtaattccacgccgtggtacgcacagggctattttgtttacgactccaaaaaggcg
ggcggcctgacggtttctcaccttcgcgtgagcgagcagccgattcgctccgcttatctc
atttcccaggctgattttgttggctgccaccagttgcagtttatcgacaaatatcagatg
gctgaacgtttaaaacctggcggcattttcctgctcaacacgccgtacagcgcagatgaa
gtatggtcgcgcttgccgcaggaagttcaggcggtgctaaatcagaaaaaagcgcgcttc
tatgtgattaacgcggcgaaaattgcccgcgaatgtggcctggcggcccgtattaatact
gtcatgcagatggcatttttccatttgacacaaattctgcctggcgatagcgccctggcc
gaattgcagggcgcgattgccaaaagctacagcagcaaaggccaggatctggtggaacgc
aactggcaggctctggcgctggcgcgtgaatcggtagaagaaattccgttgcaaccggta
aatccgcacagtgccaatcgaccgccagtggtttccgatgctgctcctgatttcgtgaaa
accgttaccgctgcaatgctcgctgggcttggcgatgctctccctgtttcggcgctgcca
ccagatggcacctggccgatgggcaccacacgctgggaaaaacgcaatattgccgaagag
atccccatctggaaagaggaactctgtactcaatgtaaccactgcgtcgccgcttgccca
cactcagctattcgcgccaaagtggtgccgcctgaagcaatggaaaatgcccctgccagc
ctgcattcgctggatgtaaaatcgcgtgatatgcgcgggcagaaatatgtcttgcaggta
gctccggaagattgcaccggctgtaacctgtgcgtcgaagtttgcccggcgaaagaccgt
cagaatccagagattaaagccatcaatatgatgtcgcgcctggaacatgtcgaggaagag
aaaatcaattacgattacttcctcaacctaccagaaatcgatcgcagcaaactggaacgt
attgatattcgtacatcgcaactgattacaccgctgtttgaatattcaggtgcttgctcc
ggttgtggcgagacgccgtatattaaattgctgactcagctctatggcgaccggatgttg
atcgctaacgctacgggttgttcttcaatttatggcggtaacctgccctctacaccgtat
actaccgatgccaacggtcgtggaccggcatgggcgaactcgctgtttgaagataacgcc
gaatttggccttggtttccgcctgacggtcgatcaacaccgtgtccgcgtgctgcgtctg
cttgatcaatttgccgataaaatcccggctaaattactaactgcgttgaaatcagacgcc
acaccagaggttcgtcgtgaacaggttgcagctttacgccagcaactcaacgatgttgcc
gaagcacatgaactgctacgtgatgcagatgcactggtggaaaaatcaatctggctgatt
ggtggcgatggctgggcttacgatatcggctttggcggtctggatcatgtattgagtttg
acggaaaacgtcaacattctggtgctggatacgcaatgctattccaacaccggtggtcag
gcgtcgaaagcgacaccgctgggtgcagtaactaaatttggcgagcacggcaaacgtaaa
gcgcgtaaagatcttggcgtcagtatgatgatgtacggtcatgtttatgtggcgcagatt
tctcttggcgcacagctcaaccagacagtgaaagcgattcaggaagcggaagcgtatccg
gggccatcgctgatcatcgcttacagcccgtgtgaagagcatggttacgatctggcactc
agtcacgaccagatgcgccaactcactgccactggcttctggccgctatatcgctttgat
ccgcgtcgtgccgaagaaggaaaactgccgctggcgctggattcacgcccgccgtcagag
gcactggaagaaacgttacttcacgagcagcgtttccgtcgtctgaattcgcagcaacca
gaagtggcagaacagttatggaaagatgctgcagctgatttgcaaaaacgctatgacttc
ctggcacaaatggccggaaaagcggaaaaaagcagttcagagtaa
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