Escherichia fergusonii: EFER_1667
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Entry
EFER_1667 CDS
T00811
Symbol
rnb
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
efe
Escherichia fergusonii
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
efe03016
]
EFER_1667 (rnb)
Enzymes [BR:
efe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EFER_1667 (rnb)
Transfer RNA biogenesis [BR:
efe03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EFER_1667 (rnb)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
OSR1_C
Motif
Other DBs
NCBI-ProteinID:
CAQ89183
UniProt:
B7LRZ1
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All DBs
Position
1713463..1715397
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
IAVIHSEKDRESAEPEELVEPFLTRFVGKVQGKNDRLSIVPDHPLLKDAIPCRAARGVDH
QFKEGDWAVAEMRRHPLKGDRSFYAELTQFITFGDDHFVPWWVTLARHNLEREAPNGVAT
EMLDEGLVRQDLTALNFVTIDSASTEDMDDALYAEALPDGKLQLTVAIADPTAWIAEGSK
LDNVAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAFEVRPALACRMTIAADGTIEDDIEF
FAATIESKAKLVYDEVSDWLENSGNWQPENDAIAEQIRLLAQICQRRGEWRHNHALVFKD
RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKIGFGIYNVHMGFD
PANADALAALLKTHGLHVDAQEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSFAEISTQ
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAAIKGETASRPQDETTVQMTERRRLNRM
AERDVGDWLYARFLKDKAGTDTRFAAEIIDISRGGMRVRLVDNGAVAFIPAPFLHAVRDE
LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgctagcgcagctaaaacagcaacttcattcccagacgcca
cgtgctgaaggggtggtaaaagccaccgaaaaaggctttggcttcctggaagtcgatgca
caaaaaagttatttcatcccaccgccgcaaatgaaaaaagttatgcacggcgatcggata
attgcagtgatccatagcgaaaaagatcgcgaatctgcggagccggaagaactggtcgaa
ccgttcctgactcgctttgtgggcaaagttcagggcaaaaatgatcgtttgtctattgtg
cctgaccatccgttattgaaagatgccattccttgccgtgcggcacgtggtgttgatcat
caattcaaagaaggcgactgggcagttgcggaaatgcgccgccatccgctgaaaggcgat
cgctctttctacgccgaattaacccaatttattacttttggtgatgaccactttgtaccg
tggtgggtcaccctcgcccgccataatcttgaacgtgaagcaccaaacggcgtggcaacc
gaaatgcttgatgaaggtctggtgcgtcaggatttgaccgcccttaactttgtcactatc
gatagcgccagcactgaagacatggatgatgcgctgtatgctgaagcactacctgatggc
aaactgcaattaacagtcgcaattgcagatcctactgcctggattgctgaaggcagcaag
ctggataacgtggcaaaaattcgcgcgtttaccaactacttgccgggcttcaatattccc
atgttgccgcgcgaattgtctgacgatctttgctcactgcgtgcatttgaagttcgcccg
gcgctggcatgccggatgactatcgccgcagatggcaccatcgaagacgatattgaattc
tttgctgcaactatcgagtctaaagcgaaactggtctatgacgaggtttctgactggctg
gaaaacagtgggaattggcaaccggaaaatgatgccattgcagaacaaatccgtctgctg
gcgcaaatctgccagcgtcgcggtgagtggcgtcataaccatgcactcgtatttaaagat
cgtcctgattatcgctttatcctgggtgaaaaaggcgaagtgctggatatcgttgcagaa
ccgcgtcgtatcgccaaccgtatcgttgaagaagccatgatcgcagccaatatttgtgct
gctcgagtacttcgcgacaaaatcggttttgggatctacaacgttcatatgggctttgat
cccgctaatgctgatgctctggctgcgctgctgaaaactcacggtctgcacgtcgatgcg
caagaagtgctgactctggaaggtttttgtaaactgcgccgcgaactggatgcccaaccg
tcaggttttcttgacagccgtattcgccgtttccagtcatttgctgaaattagtactcaa
ccagggccacattttggcctggggcttgaggcttacgccacctggacgtcacctattcgt
aaatatggcgacatgatcaaccatcgtttactgaaagcggcaattaaaggcgaaactgcc
agccgccctcaggatgaaacgactgtccaaatgaccgaacgccgtcgccttaaccgcatg
gctgagcgtgatgtcggtgactggctgtatgcgcgattcctgaaagataaagcgggcaca
gacactcgcttcgccgcagaaatcattgatattagccgtggtggtatgcgtgtacggttg
gttgacaatggtgcagttgcatttatccctgcccctttcctgcacgctgttcgtgatgaa
ctggtatgcagtcaagagaacggcaccgtgcaaattaaaggcgagacagtgtacaaagtg
acagatgtcattgatgtcaccatcgccgaagtacgtatggaaacccgcagcattattgcc
cgtccggtcgcctga
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