Escherichia fergusonii: EFER_1668
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Entry
EFER_1668 CDS
T00811
Symbol
gmr
Name
(GenBank) modulator of Rnase II stability
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
efe
Escherichia fergusonii
Pathway
efe02024
Quorum sensing
efe02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
EFER_1668 (gmr)
02026 Biofilm formation - Escherichia coli
EFER_1668 (gmr)
Enzymes [BR:
efe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
EFER_1668 (gmr)
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Paralog
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Motif
Pfam:
EAL
GGDEF
PdeR_N
PAS_9
PAS
PAS_8
PAS_4
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
CAQ89184
UniProt:
B7LRZ2
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All DBs
Position
1715621..1717612
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AA seq
663 aa
AA seq
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MKIVMEPATLYNYLGTHTPFWRLSDNCNVLHLSTIEAAESERTIELSPEQANRIREMTVI
TSSMMMTLPLEESDVSVHLVGRKINKREWAGSASAWHDTPSVARDLMHGLSFAEQVVSEA
NSAILILDSRGNIQRFNRLCEEYTGLKEHEVIGQSVFKLFMSRREAAASRRNIDVFFRSG
NAWEVERWIKTRKGQRLFLFRNKFIHSGSGKNEIYLICSGTDITEERVAQERLRVLANTD
TITGLPNRNAIHELIDNAIVQTTNAQVGIVYLDLDNFKKVNDAYGHMFGDQLLQAVALAI
LSCLDNDQTLARHGGDEFIVLAPDTSQGALEAMASRILTRLRLPFRIGLIEVQTGCSVGI
ALSPLHGHDSDSLIRSADTAMYTAKEGGRGQFCVFSPEMNQRVFEYLWLDTNLRKALEND
QLLIHYQPKVTWRGEVRSLEALVRWQSPERGLIPPGEFISYAEESGLIVPLGRWVILDVV
RQVAKWRSKGINLRVAVNISARQLADQTIFTYLKQVLHELDFEYCPIDVELTERCLLENE
ALALSVIQQFSRLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQAFVRNIHKQSVSQSLV
RAIVAVAQALNLQVIAEGVESVKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYLNK
TMR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcgttatggagcctgccacgttgtataactatttgggtactcacactcctttc
tggcgtttgtcagataactgtaatgttctgcatctttcgacgattgaagcagcagaatct
gaacgcaccattgagttatctcctgaacaagctaaccgtattcgtgaaatgacggttatt
acttccagtatgatgatgacgctaccgctggaagaaagtgatgtttcagttcatctggtt
ggacgcaaaatcaataagcgtgaatgggcaggcagcgcatccgcatggcatgatacccct
tctgttgctcgtgacttaatgcacgggctttcttttgctgaacaggttgtctccgaagcg
aactcagccattttgatcctcgacagccggggcaacattcaacgatttaatcgcttatgc
gaagaatataccggtttaaaagaacatgaagtcattggtcaaagcgtattcaaactcttt
atgagtcgtcgggaagctgcagcctcccgacgtaacattgacgtttttttccgtagtgga
aacgcatgggaagttgaacgctggatcaaaacccgtaaaggacaacgcctgttccttttt
cgcaataaattcattcatagcggcagtggtaaaaatgaaatttatttaatctgttcgggg
actgatatcactgaggagcgtgtggcccaggaacgtctgcgggtactcgccaatacagat
acgattaccgggcttcctaatcgtaacgctattcatgagttgatcgataatgctatcgtt
cagactacaaacgctcaggtcggcattgtttatctcgatctcgataatttcaaaaaagtg
aacgatgcttacggccatatgtttggtgaccaactgctgcaagccgttgcattggccata
ctcagttgtctcgataacgatcagacgctggcacgtcatggtggtgatgagtttatcgtc
ctggcaccagacacttcacaaggtgcgcttgaagccatggcatctcgtattcttacgcgc
ctgcgcttaccttttcgtattggtttgattgaagtacagaccggctgctcggttggcatt
gcactttcacctttgcatggtcatgacagcgacagtcttatccggagcgccgatacggcc
atgtacaccgctaaagaaggcggtcgaggtcaattctgtgtcttttctcccgaaatgaat
cagcgtgtttttgagtatttgtggctggacactaacttacgtaaagctctggagaatgat
caactgctgattcactatcaaccaaaggtcacttggcgcggagaagtgcgcagtctcgaa
gcgctggtacgatggcagtcgcctgagcgtggactcattcctccgggtgaatttatctct
tatgcagaagaatcaggattaattgttccgcttggtcgctgggtcattcttgatgtagtg
cgccaggtggcaaaatggcgaagcaaaggaattaatttacgtgtagcggtcaacatttct
gctcgccaactggcagaccaaactatttttacctatctgaaacaagttttgcatgagctt
gattttgaatactgccctatcgacgtagaattaaccgaacgctgtctgctcgaaaatgaa
gcactggcgttgtctgtcattcagcaatttagccgcctcggggcgcaggtgcacctggat
gattttggtacgggatattcatcactgtcacaactggcacgttttcctatagatgccata
aaactcgatcaggcctttgttcgcaatatacacaagcaatctgtttctcagtcgttagtg
agggcgattgtggcggttgctcaggcacttaacctgcaagtcattgccgaaggtgttgaa
agcgtgaaagaggatgctttcctgacgaaaaatggcgttaacgaacgacaaggttttttg
tttgccaaacccatgcctgctgtagcctttgagcgttggtataagcgttatttaaataaa
acaatgcgttga
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