Escherichia fergusonii: EFER_1683
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Entry
EFER_1683 CDS
T00811
Symbol
topA
Name
(GenBank) DNA topoisomerase I, omega subunit
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
efe
Escherichia fergusonii
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
efe03032
]
EFER_1683 (topA)
03400 DNA repair and recombination proteins [BR:
efe03400
]
EFER_1683 (topA)
Enzymes [BR:
efe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EFER_1683 (topA)
DNA replication proteins [BR:
efe03032
]
Prokaryotic type
DNA Topoisomerases
EFER_1683 (topA)
DNA repair and recombination proteins [BR:
efe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EFER_1683 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
DUF4795
Motif
Other DBs
NCBI-ProteinID:
CAQ89199
UniProt:
B7LS07
LinkDB
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Position
complement(1728898..1731495)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSTAKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDARYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDANTTTPSGDALALQVTH
QNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKEN
SQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRILPAVDKGDALTLVELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGEDAETNALRAKR
RCPKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNEECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPAGNKSMVRFSRKTKQQYV
SSEKEGKATGWSAFYIDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtaatgactatgtggtgaaatccagtgttggtcatatccgtgatttgccgaccagt
ggctcaaccgctaaaaagagcgccgactctacctccaccaaaacggctaaaaagcctaaa
aaggatgaacgtggcgctctggtcaaccgtatgggggttgatccatggcacaactgggag
gcgcactatgaagtgctgcctggtaaagagaaagttgtctctgaactcaaacaattggct
gaaaaagccgatcacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagtaattggtggtgatgatgcgcgctatagtcgcgttgtctttaat
gaaatcacgaaaaacgcgattcgtcaggcctttgaaaagcctggagagttaaatattgat
cgtgtaaatgcccagcaggcgcgtcgctttatggaccgcgtggtgggatatatggtctct
ccactgctgtggaaaaagatcgcccgcggtctctccgcgggaagggtacagtccgttgct
gttcgtctggtggtggagcgtgagcgtgaaattaaagccttcgtcccggaagaattctgg
gaagtagacgctaataccacgacgccttctggcgatgcactggcattacaggttactcat
cagaacgacaaaccgttccgcccggtcaacaaagaacaaactcaggctgcggtaagtctg
ctggaaaaagcgcgctacagcgtgctggaacgtgaagacaaaccgacaaccagtaaacct
ggcgctccttttattacctctacgctgcaacaagctgccagcacccgtcttggttttggc
gtgaaaaaaaccatgatgatggcgcagcgtttgtatgaagcaggctatatcacttacatg
cgtaccgactccaccaacctgagtcaggacgcagtaaatatggttcgcggttatatcagc
gataattttggtaagaaatatctgccggaaagtccgaatcagtacgccagcaaagaaaac
tcacaggaagcgcacgaagcgattcgtccttctgacgtcaatgtgatggcggaatcgctg
aaggatatggaagcagatgcgcagaaactgtaccagttaatctggcgtcagttcgttgcc
tgccagatgaccccagcgaaatatgactccacgacgctgaccgttggtgcgggcgatttc
cgcctgaaagcacgcggtcgtattttgcgctttgatggctggacgaaagtgatgcctgcg
ctgcgtaaaggcgatgaagatcgtatcttaccggcagtcgataaaggcgatgctctgacg
ctcgttgaactgacaccagcccagcactttaccaagccgccagcccgtttcagtgaagca
tcgctggttaaagagctggaaaaacgcggtatcggtcgtccgtctacctacgcgtcgatc
atttcgaccattcaggatcgtggctatgtgcgagtagaaaatcgtcgtttctatgcggaa
aaaatgggcgaaatcgtcaccgatcgcctggaagagaatttccgtgagttaatgaactac
gacttcaccgcacagatggaaaacagcctcgaccaggtggcaaatcacgaagcagagtgg
aaagctgtactggatcacttcttctcggatttcactcagcagcttgataaagctgaaaaa
gatccggaagagggtggtatgcgcccaaatcagatggttctgaccagcatcgactgcccg
acctgtggtcgcaaaatggggattcgtaccgccagcacgggggtattcctgggctgttcc
ggctatgcgctgccaccgaaagagcgttgcaaaacaaccattaacctggtaccggaaaac
gaagttcttaacgtgctggaaggcgaagacgcagaaaccaacgctttgcgcgccaaacgt
cgttgcccgaaatgtggcacggcgatggacagctatctcatcgatccgaaacgtaaattg
catgtctgtggtaataacccaacctgcgacggttacgaaatcgaagagggcgaattccgc
attaaaggttatgacgggccgatcgttgagtgtgaaaaatgtggttctgaaatgcacctg
aaaatggggcgcttcggtaagtacatggcctgcactaacgaagagtgtaaaaacacgcgt
aagattttacgtaatggcgaagttgcgccgccgaaagaagatccagttccactgccagag
ctgccgtgtgaaaaatcggatgcttatttcgtgctgcgtgacggtgctgctggcgtcttc
cttgcggctaacaccttcccgaaatcgcgtgaaacacgtgcgccgctggtggaagaactt
tatcgcttccgcgaccgtctgccagaaaaactgcgctatctggcggatgcaccgcagcag
gacccagctggtaataaatcgatggtccgctttagccgcaaaacgaagcagcaatatgtc
tcttcggaaaaagagggtaaagctactggatggtccgcattctacattgatggtaagtgg
gtcgaaggtaagaaataa
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