Escherichia fergusonii: EFER_1844
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Entry
EFER_1844 CDS
T00811
Symbol
rne
Name
(GenBank) fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
efe
Escherichia fergusonii
Pathway
efe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EFER_1844 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efe03019
]
EFER_1844 (rne)
03009 Ribosome biogenesis [BR:
efe03009
]
EFER_1844 (rne)
Enzymes [BR:
efe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EFER_1844 (rne)
Messenger RNA biogenesis [BR:
efe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EFER_1844 (rne)
Ribosome biogenesis [BR:
efe03009
]
Prokaryotic type
rRNA processing factors
EFER_1844 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CAQ89357
UniProt:
B7LT53
LinkDB
All DBs
Position
1894457..1897636
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AA seq
1059 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME
TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEESPERKRPEQPALATFAMPDVPPV
PPAPAEPVVKAAPAPKAAEPAATPAQPGLLSRFFAALKSIFSGSDDAKPAEQPAPKAAEK
PERQQDRRKPRQNTRRDRNERRDTRSERTENSDNREENRRNRRQAQGAESRDNRQQVNDI
EKTKPTDEQQTPRRERSRRRNDDKRQAQAEVKALNVDEQATQEVEQEERVRQPQPRRKQR
QLTQKVRYTSESAVETVTTPVAEEAPVTQQAAPAAPAQRTELVKIPLPAVTEVAQEQQES
SDIPDNRDSNGMPRRSRRSPRHLRVSGQRRRRYRDERYPNQSPMPLTVACASPELASGKV
WIRYPVVRPQDVQVEEQREQDAVQTQPAVHDAPAIAAVVPAAVEQVTAPVVQQEASEEVK
PVVVETTHPEVIAAAVDEQPQVIAEADATVAEETAQQAEPAVESEPEAPVAENTEVNVVE
PEALSTPVEAVPEVAKVEVEQPVIKTESQPVETAEIAAVSHNHATAPMTRAPAPEYVPEA
PRHSDWQRPAFVFEGKGAAGGHAATHHAVAGPTRPQPVE
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagat
gggcagcgtctgtatgacctggatatcgaaagtccagggcatgagcagaaaaaggcaaac
atctacaaaggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccactaaaagaaattgcccgcgaatatttccctgct
aactacagtgctcatggtcgtcccaacattaaagatgtgttgcgtgaaggccaggaagtc
attgttcagatcgataaagaagagcgaggtaacaaaggcgcggcattaaccacctttatc
agtctggcgggtagctatctggttctgatgccaaataacccgcgcgcgggtggcatttct
cgccgtatcgaaggcgacgaccgtaccgaattaaaagaagcactggcaagccttgaactg
ccggaaggcatggggcttatcgtgcgcaccgctggcgtcggcaaatctgctgaggcgctg
caatgggatttaagcttccgtctgaaacactgggaagccatcaaaaaagctgccgaaagc
cgccctgctccgttcctgattcatcaggagagcaacgtaatcgttcgcgccttccgcgat
tacttacgtcaggatatcggcgaaatccttatcgataacccgaaagtgctcgaactggca
cgtcagcatatcgctgcattaggtcgcccggatttcagcagcaaaatcaagctgtacact
ggtgaaattccgctgttcagccactaccagatcgaatcgcagattgagtccgccttccag
cgtgaagtccgactgccgtccggcggttccattgttatcgacagcaccgaagcgttaact
gccatcgatatcaactccgcacgcgcgacccgcggcggcgacatcgaagaaaccgcgttt
aacaccaacctcgaagctgccgatgagattgctcgtcagctgcgcctgcgtgacctcggc
ggcctgattgttatcgactttatcgatatgacaccagtacgccaccagcgtgcggtagaa
aaccgtctgcgtgaagcggtgcgtcaggaccgtgcgcgtattcaaatcagccatatttct
cgctttggtctgctggaaatgtcgcgtcagcgcctgagtccgtctctgggcgagtccagc
catcacgtctgcccgcgctgctccggtaccggcaccgtgcgtgacaacgaatctctgtcg
ctctcaattctgcgtctgattgaagaagaagccctgaaagagaacactcaggaagtccac
gctattgttcctgtgcctatcgcttcttacctgctgaacgaaaaacgttctgcggtaaat
gccattgaaacgcgtcaggacggcgtgcgttgtgtgattgtacctaacgatcagatggaa
accccgcactaccatgtgctgcgcgtacgcaaaggggaagaaactccaaccttaagctac
atgctgccgaagctgcatgaagaagcgatggcgctgccatctgaagaagaatctcctgaa
cgtaaacgtcctgagcaacccgcactggcaacctttgcgatgccagatgtcccccctgtc
ccaccagcgcctgctgaaccggtagttaaagctgctccggcaccaaaagctgctgaaccc
gctgctacacctgctcaacccggtttattaagccgtttctttgctgcattaaaatctatt
tttagtggcagtgatgacgctaaaccagcagagcagccagcaccgaaagcggcagaaaaa
ccagagcgtcaacaggatcgccgtaaaccgcgtcagaacacacgtcgtgaccgcaatgag
cgtcgtgatacgcgtagtgaacgcactgaaaacagtgataatcgcgaagagaatcgccgt
aaccgccgccaggcacaaggtgccgaatcgcgtgataatcgtcagcaagttaatgatatt
gaaaaaaccaagcctacggatgaacagcaaacaccgcgccgcgaacgtagccgtcgtcgt
aacgatgacaaacgtcaggcacaggctgaagttaaagcgctgaatgttgatgagcaagcg
actcaggaagtcgaacaggaagagcgtgtacgtcagcctcagcctcgtcgtaaacagcgt
caactgacacaaaaagttcgctacaccagtgaaagcgcggttgaaaccgtcaccactcct
gttgctgaagaagccccggtaactcagcaagctgcgccagcagcacctgctcaacgtact
gaactggtgaaaattcctctgcctgccgtcaccgaagtggcacaagagcagcaagagagt
tccgacattcctgataaccgtgacagcaacggtatgccccgtcgttcacgccgctcgcct
cgccatctgcgtgtgagtggtcaacgtcgtcgtcgttatcgtgatgaacgttatccgaat
cagtcaccaatgccattaaccgttgcatgcgcttccccggaactggcttcaggtaaagtt
tggatccgctatccggtagtacgtccgcaagatgttcaggttgaagaacaacgtgagcaa
gatgcggtgcagacacagccagctgttcatgatgcaccggccattgccgctgttgtacca
gctgctgttgaacaggtaacagcccctgtcgttcagcaggaggcctctgaagaagtgaag
cctgtcgtagtggaaactacgcatcctgaagtgattgccgctgccgtagatgaacaacca
caggtaatcgccgaggccgatgcgactgttgccgaggaaacggctcagcaagctgaacct
gctgttgaaagcgaaccagaagcaccagtagctgaaaacacagaagttaatgtggttgaa
ccagaagcgctttctacacctgttgaagccgtaccggaagttgcaaaggttgaggttgag
caacctgttatcaaaactgagtctcagcctgttgagactgccgaaattgcagcggtatca
cacaatcacgctactgcgccaatgacccgggctccagcaccggagtacgttccggaagct
ccgcgtcatagcgactggcaacgtcctgcctttgtttttgaaggtaaaggagcagctggt
ggccacgcagcaacgcaccatgctgttgcaggtccgactcgcccacaaccggtagagtaa
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integrated database retrieval system
