Escherichia fergusonii: EFER_2311
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Entry
EFER_2311 CDS
T00811
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
efe
Escherichia fergusonii
Pathway
efe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EFER_2311 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efe03019
]
EFER_2311 (rhlE)
Enzymes [BR:
efe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EFER_2311 (rhlE)
Messenger RNA biogenesis [BR:
efe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EFER_2311 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
CAQ89812
UniProt:
B7LJW2
LinkDB
All DBs
Position
complement(2369972..2371336)
Genome browser
AA seq
454 aa
AA seq
DB search
MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAK
RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI
GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEGGSKSA
SAKPAEKPSRRLGDAKPAGEQQRRRRPRKPAAAQ
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgattctttggggttaagccctgatatcttgcgcgccgttgccgagcaaggt
taccgtgaacccacccctattcagcagcaggcgatccctgcggtgctggaaggccgcgac
ctgatggctagcgcccagaccggcactggcaaaacagcgggctttacgctgccgctgttg
caacacctgatcactcgccagccgcacgccaaagggcgtcgtccggtccgtgcgctcatt
cttaccccaacccgtgaactggctgcacagattggcgaaaacgtccgtgattacagcaaa
tacctgaatattcgttcgctggtggtgtttggcggcgtcagcatcaacccgcagatgatg
aagctgcgtggcggcgttgatgtgctggtggcaacgccgggacgtctgctggacctggaa
catcagaatgcagtgaagctggaccagatagaaatcctggtcctcgatgaagctgaccgt
atgctcgacatgggctttatccacgatatccgtcgtgtgttgactaagctgccagcgaag
cgccagaacctgttgttctccgccactttctcagacgatattaaaaacctggcggaaaaa
ctgctgcacaacccgctggaaatcgaagtggcacgccgcaataccgcgtctgatcaggtg
acccagcatgttcactttgttgataaaaaacgcaaacgcgaattgctgtcgcacatgatt
gggaaagggaactggcagcaggtgctggtgtttacccgtactaaacacggcgctaaccat
ctggcggaacagctcaataaagatggcatccgtagtgcggcgatccacggtaataaatcg
caaggtgcgcgtactcgtgcgctggccgattttaaatcgggcgatattcgtgttctggtg
gcaactgacatcgctgcacgcggtctggatatcgaagagttgccgcacgtcgtcaactat
gaactgccaaacgtaccggaagattacgtccaccgtatcgggcgtaccggtcgtgcagcg
gcaactggtgaagcgttatcgctggtgtgtgtggatgaacacaaacttctgcgtgatatc
gaaaaactgctgaaaaaagagattccacgcattgcgattccgggttatgagccggacccg
tcaatcaaagccgaaccgatccagaacggtcgccagcaacgtggcggcggcggtcgtggg
caaggtggtggtcgcggtcaacagcaaccacgccgtggagaaggtggctcaaaatctgca
agcgcaaaacctgcagaaaaaccgtctcgtcgtctcggcgatgccaaaccggcaggcgag
caacaacgccgtcgccgtccgcgtaaacctgccgctgcgcagtaa
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