Escherichia fergusonii: EFER_3141
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Entry
EFER_3141 CDS
T00811
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
efe
Escherichia fergusonii
Pathway
efe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EFER_3141 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efe03019
]
EFER_3141 (deaD)
03009 Ribosome biogenesis [BR:
efe03009
]
EFER_3141 (deaD)
Enzymes [BR:
efe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EFER_3141 (deaD)
Messenger RNA biogenesis [BR:
efe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EFER_3141 (deaD)
Ribosome biogenesis [BR:
efe03009
]
Prokaryotic type
rRNA helicases
EFER_3141 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
CAQ90634
UniProt:
B7LR31
LinkDB
All DBs
Position
complement(3225726..3227615)
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AA seq
629 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD
LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD
GRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaattcaggcagagtgtattccacatctg
ctgaatggccgcgacgttctgggtatggcccagacggggagcggaaaaactgcagcattc
tctttacctctgctgcaaaatcttgatcctgagctgaaagcaccacagattctggtgctg
gcaccgacccgcgaactggcggtacaggttgctgaggcaatgacggatttctctaaacac
atgcgcggcgtaaacgtggttgccctgtacggcggccagcgttatgacgtgcaattacgc
gccctgcgtcaggggccgcagatcgttgtcggtactccaggccgtctgctggaccacctg
aaacgtggcactctggacctctctaaactgagcggtctggttctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggt
catcagaccgctctgttctctgcaactatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatc
agccagagctactggactgtgtgggggatgcgtaaaaacgaagcactggtacgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgactttggaa
gtggcagaagctcttgagcgtaacggctacaacagcgccgcgctgaacggtgacatgaac
caggcgctgcgcgagcagactctggaacgtctgaaagacggccgtctggatatcctgatt
gcgaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtagttaactac
gatatcccgatggattctgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggg
cgtgctggtcgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatt
gaacgcactatgaagctgaccattccggaagtagaactgccgaacgcagagctgctgggc
aaacgccgtctggaaaaatttgccgctaaagtacagcagcagctggaaagcagcgatctg
gatcaataccgtgcactgctgagcaaaattcagccgactgccgaaggtgaagagctggat
ctcgaaactctggccgccgcactgctgaaaatggcacagggtgagcgtactctgattgtt
ccgccagatgcgccgatgcgtccgaaacgtgaattccgcgaccgtgacgaccgtggtccg
cgcgatcgtaacgaccgtggcccgcgtggcgaccgtgaagatcgtccgcgtcgtgaacgt
cgtgatgttggcgatatgcagctgtaccgtattgaagtgggccgcgatgatggtgttgaa
gttcgtcatatcgttggcgcgattgctaacgaaggcgacatcagcagccgttacatcggt
aatatcaagctgtttgcttctcactccaccatcgaactgccgaaaggtatgccgggtgaa
gtgctgcaacactttacgcgtactcgcattcttaacaagccgatgaacatgcagttgctg
ggcgatgcacagccgcatactggtggtgagcgtcgtggcggtggtcgtggtttcggtggc
gaacgtcgtgaaggcggtcgtaacttcagcggtgaacgccgtgaaggtggtcgtggtgat
ggtcgtcgttttagcggcgaacgtcgtgaaggccgcgcaccgcgccgtgatgactctacc
ggtcgtcgtcgtttcggtggtgatgcgtaa
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