Escherichia fergusonii: EFER_3389
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Entry
EFER_3389 CDS
T00811
Symbol
rtcB
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
efe
Escherichia fergusonii
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
efe03016
]
EFER_3389 (rtcB)
Enzymes [BR:
efe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EFER_3389 (rtcB)
Transfer RNA biogenesis [BR:
efe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EFER_3389 (rtcB)
Prokaryotic type
tRNA splicing ligases
EFER_3389 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
CAQ90866
UniProt:
B7LSC3
LinkDB
All DBs
Position
complement(3452040..3453266)
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AA seq
408 aa
AA seq
DB search
MNYELLTTENVPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTALTAADLPENLAELRQAIETAVPHGRTTGRCKRDK
GAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDESDQV
WIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRDLAYFLEGTEYFDDYLKAVAWAQ
LFASLNRDAMMENVVTALQSVTQKTVRQPQTLAMEEINCHHNYVQKEQHFGEEIYVTRKG
AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRA
TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVIYTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattactgaccactgaaaatgtcccggtaaaaatgtggaccaaaggcgta
ccggtagaagacgatgcgcgtcagcaacttattaatacggcgaagatgccgtttattttc
aaacatattgcagtaatgcctgatgtacatctgggtaaaggttccaccattggtagcgtg
atcccgaccaaaggggcgattattccggcggcagtgggcgtggatattggctgtggaatg
aacgcgctgcgtaccgcgttaacggcggctgacctgcctgaaaacctggcggagttgcgt
caggcgattgaaactgccgtgccgcatgggcgtaccacaggccgttgtaaacgtgataaa
ggcgcatgggaaaacccgcctgttaacgtcgatgcgaaatgggctgagcttgaagccggt
tatcagtggttaacgcaaaaatatccgcgtttccttaataccaataactataaacacctg
ggaacgctgggaacgggtaaccactttattgaaatttgccttgatgagtcggatcaggtg
tggattatgctgcactccggttcacgcggaattggtaatgccatcgggacttactttatc
gatctggcgcaaaaagagatgcaggaaacgcttgaaacgttgccatcgcgtgacctggcg
tactttctggaaggtacggaatattttgacgattacctgaaagcggtggcctgggcgcag
ctttttgccagccttaaccgcgatgcgatgatggaaaacgtggtaacggcgttgcagagc
gttacgcagaaaacggtaagacagccacaaacgctggcgatggaagagatcaactgtcac
cacaactatgtgcaaaaagaacagcactttggcgaagagatctatgtgacgcgtaaaggc
gcggtgtctgcgcgtgctggtcaatatggaattattcccggttcgatgggggcgaaaagc
tttattgtccgtgggctgggaaatgaagagtcgttctgttcgtgcagccacggtgccggg
cgggtaatgagccgtactaaagcgaaaaaactgttcagcgtggaagatcaaattcgtgcc
accgcgcatgtggaatgccgtaaagatgccgaagtgatcgacgaaatcccgatggcgtat
aaagatatcgacgcggtgatggcggcacaaagcgatctggtggaagttatctacaccctg
cgtcaggtggtgtgtgtaaaaggataa
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