Escherichia fergusonii: EFER_3390
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Entry
EFER_3390 CDS
T00811
Symbol
rtcR
Name
(GenBank) sigma 54-dependent transcriptional regulator of rtcBA expression
KO
K14414
transcriptional regulatory protein RtcR
Organism
efe
Escherichia fergusonii
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
efe03000
]
EFER_3390 (rtcR)
Transcription factors [BR:
efe03000
]
Prokaryotic type
Other transcription factors
Others
EFER_3390 (rtcR)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA
AAA_5
Mg_chelatase
NACHT
AAA_22
AAA_16
AAA_30
AAA_7
AAA_19
AAA_2
AAA_33
AAA_14
T2SSE
ATPase_2
TsaE
ResIII
MCM
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
CAQ90867
UniProt:
B7LSC4
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All DBs
Position
3453455..3455053
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AA seq
532 aa
AA seq
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MRKTVAFGFVGTVLDYAGRGSQRWSKWRPSLCLCQQESLVIDRLELLHDARSRSLFETLK
RDIANVSPETEVVGVEIELHNPWDFEEVYACLHDFARGYAFEPDKEDYLIHITTGTHVAQ
ICWFLLAEARYLPARLIQSSPPRKKEQPNSPGAVTIIDLDLSRYNAIASRFAKERQQTLD
FLKSGIATRNSHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFSG
AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANDGMLFLDEIGELGADEQA
MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG
LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT
RMATFADSGRITLETVEDEINRLRYNWQDSRSSALKQLLGAEAENIDLFDRLQLEHVIAI
CRQAKSLSAAGRELFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaacagtggcttttggctttgtcggcaccgtactggattatgccgggcgcggc
agtcagcgatggtcgaaatggcgtccgtcactctgtctatgccagcaagaatcgttagtc
atcgatcgactggaattgttgcacgacgcccgctcacgctcgctgtttgaaacgcttaaa
cgcgatatcgccaatgtttcgccagaaacagaagtggtgggcgttgagattgaactgcat
aacccatgggatttcgaggaggtttacgcctgcctgcatgatttcgcccgtggttacgcg
ttcgaacctgataaagaagactatttaattcacatcaccaccggtacccacgtcgcgcag
atttgctggtttctgctggcggaagcacgttacctgcccgccaggttaatacaatcttcg
ccaccgcgtaaaaaagaacagcccaatagccctggtgcggtgacgattatcgatctcgat
ttaagccgttataacgctattgccagccgctttgccaaagaacgccagcaaaccctcgat
ttcctcaaatccggcattgccacgcgtaactcccatttcaaccgcatgattgagcagatc
gaaaaagtggcgatcaaatcccgcgcaccgatcctgcttaacggcccgaccggtgcgggt
aagtcatttctggcgcgacgcatctttgaattaaaacaggcacggcatcagtttagcggc
gcgtttgtggaagtgaactgcgccaccctgcgcggcgataccgccatgtcgacgctgttt
ggtcatgtgaaaggcgcgttcaccggggcgcgggaatctcgtgaaggattattacgcagc
gccaacgatggcatgttgtttcttgatgagattggcgaactgggcgcagacgaacaggcg
atgttgctgaaagccattgaagagaaaaccttttacccgtttggcagcgatcgccaggtg
agcagtgattttcagctgatcgccggaacggtgcgcgatttgcgtcagctggttgccgaa
ggcaaatttcgcgaagacctgtacgcgcggatcaatctctggaccttcaccctgccgggt
ctacgccagcgccaggaagatattgaaccgaacctggattatgaagtggagcgccacgcc
tcactcaccggcgacagcgtacgttttaacaccgaagcgaggcgcgcctggctggccttt
gcgacatctccccaggcaacatggcgcggtaactttcgcgagctttctgccagcgtcaca
cgcatggcgacgtttgccgatagtgggcgtatcacccttgaaaccgtagaagatgagata
aaccgtctacgctacaactggcaggatagccgctcttctgcgcttaagcagctactgggc
gctgaagcggaaaatatcgacctctttgatcggctgcaactggaacacgttatcgctatc
tgccgtcaggcaaagtcgctttccgctgccgggcgtgaactctttgatgtttcgcgccag
ggcaaagccagcgtcaacgacgcggatcggctacgcaaatatctggcgcgttttggtctg
acgtgggaagccgtgcaggatcagcacagctccagctga
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