Escherichia fergusonii: EFER_3679
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Entry
EFER_3679 CDS
T00811
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
efe
Escherichia fergusonii
Pathway
efe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EFER_3679 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efe03019
]
EFER_3679 (recQ)
03400 DNA repair and recombination proteins [BR:
efe03400
]
EFER_3679 (recQ)
Enzymes [BR:
efe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EFER_3679 (recQ)
Messenger RNA biogenesis [BR:
efe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EFER_3679 (recQ)
DNA repair and recombination proteins [BR:
efe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EFER_3679 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
CAQ91141
UniProt:
B7LU33
LinkDB
All DBs
Position
complement(3771612..3773441)
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AA seq
609 aa
AA seq
DB search
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP
ALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY
IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL
TATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIAL
STIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLR
KLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggagtccggagctaaacaggttttacaagaaacc
tttggctaccaacagtttcgccccggccaggaagagattatcgacaccgtactttccggt
cgcgattgcctggtcgtcatgcccactggtggcggaaaatccctttgctatcaaattcct
gccttactgctaaacggtcttaccgtggttgtttcaccactgatttcgttgatgaaagat
caggtggatcagctacaggccaacggcgtggcggcggcgtgccttaactcgacgcaaacc
cgcgagcagcagcttgaagtaatgacaggctgccgcaccgggcaaatccgcctgctgtat
atcgcgccggaacgcctgatgctggataactttcttgagcatctggcgcactggaatccg
gtgttattagctgttgatgaagcgcactgtatctcccaatgggggcacgatttccgcccg
gaatacgccgcgctcggtcagctgcgtcagcgttttcctactctgccgtttatggcgcta
accgccaccgccgacgacaccacgcggcaggatatcgtgcgcctgctggggctgaacgat
ccgctgattcaaattagcagttttgaccgtccgaatattcgctacatgctgatggagaag
ttcaaacctctcgatcagttgatgcgctacgtgcaggaacaacgcggtaagtcggggatt
atttactgtaatagtcgtgcgaaagtagaagacaccgccgcgcgtctgcaaagcaagggt
atcagcgcagcggcttatcacgccgggcttgaaaacgatgtccgtgcggacgtgcaggaa
aaattccagcgtgatgacctgcaaattgtggtggcgacggtagcgttcggcatgggcatc
aacaagcctaacgtccgcttcgtggttcactttgatattccacgcaatatcgaatcctat
tatcaggaaaccggtcgcgccgggcgtgatggcctgcccgcggaagcgatgctgttttac
gatccggccgatatggcgtggctgcgccgttgcctggaagagaaaccgcaggggcagttg
caggatatcgaacgccataaactcaatgcgatgggcgcgtttgctgaggcgcaaacctgt
cgtcgtctggtgctgctgaactactttggcgaagggcggcaggagccgtgcgggaactgc
gatatctgtctcgatccgccgaaacagtacgacggttcaaccgatgcgcagattgcgctt
tccaccattggtcgtgtgaatcagcgttttggtatgggctatgtagtggaagtgattcgc
ggcgccaataaccagcgaatccgcgactatggtcatgacaaactgaaagtctatggcatg
ggccgtgataaaagccatgaacattgggtcagcgtgatccgccagctgattcatctcggc
cttgtgacgcaaaatatcgcccagcattcggcattacaactgacagaagccgcacggcct
gtgttgcgcggcgaatcctctttacaacttgccgtgccgcgtattgtggcgcttaaaccg
aaggcgatgcagaaatcgttcggcggcaattacgatcgcaaactgttcgccaaattacgc
aaactgcgtaaatccattgctgatgaaagtaatgtcccgccgtatgtggtgtttaacgac
gcgaccttgattgagatggcggaacagatgccaatcaccgccagcgaaatgctcagcgtt
aacggcgttgggatgcgcaagctggaacgctttggcaaaccgtttatggcgctgattcgt
gcgcatgtcgatggcgatgacgaagagtag
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