Escherichia fergusonii: EFER_4232
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Entry
EFER_4232 CDS
T00811
Symbol
rnr
Name
(GenBank) exoribonuclease R, RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
efe
Escherichia fergusonii
Pathway
efe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EFER_4232 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efe03019
]
EFER_4232 (rnr)
03016 Transfer RNA biogenesis [BR:
efe03016
]
EFER_4232 (rnr)
Enzymes [BR:
efe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EFER_4232 (rnr)
Messenger RNA biogenesis [BR:
efe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EFER_4232 (rnr)
Transfer RNA biogenesis [BR:
efe03016
]
Prokaryotic type
tRNA degradation factors
EFER_4232 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
CAQ91651
UniProt:
B7LLW1
LinkDB
All DBs
Position
4339986..4342427
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AA seq
813 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQELREQYAPLVKHLEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF
VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA
KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagctgaaaaatacgcgaatcccatccctagt
cgggaatttatcctcgaacatttaaccaaacgtgaaaaaccggccagccgtgatgagctg
gcggtagaactacacattgaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgt
gcgatggagcgcgacggtcaactggtcttcactcgccgtcagtgctatgcgctgccggaa
cgcctcgacctggtgaaaggtaccgttattggccaccgtgatggctacggctttctgcgg
gttgaagggcgtaaagatgatttgtatctctccagcgagcagatgaaaacctgcattcat
ggcgatcaggtcctggcgcagccgctgggcgctgaccgtaaaggccgccgtgaagcgcgt
attgtccgcgtgctggtgccaaaaaccagccagattgttggccgctactttaccgaagcg
ggcgtcggctttgtggttcctgacgacagccgtctgagcttcgatatcttaatcccgccc
gatcagatcatgggcgcgcggatgggctttgtggtggtggttgaactgactcaacgcccg
actcgccgtaccaaagcggtgggtaaaatcgtcgaagtgctgggcgataatatgggcacc
ggcatggcggttgatattgctctgcgtacccatgaaattccgtacatctggccgcaggct
gttgagcaacaggttgccgggctgaaagaagaagtgccggaagaggcgaaagctggccgt
gtcgatctgcgcgatttaccgctggtcaccattgatggcgaagacgcccgtgactttgac
gatgcagtttactgcgagaaaaaacgcggcggtggctggcgtttgtgggtcgcaattgcc
gatgtcagctactatgtgcgtccgccaacaccgctggacagagaagcgcgtaaccgtggt
acgtcggtctacttcccttcgcaggttatcccgatgctgccggaagtgctctctaacggc
ctgtgttcgctcaacccgcaggtagaccgcctgtgtatggtttgcgagatgacgatttcg
tcgaaaggccgcctgacgggctacaaattctacgaagcggtgatgagctctcacgcgcgt
ctgacctacaccaaagtctggcatattctgcagggcgatcaggagctgcgcgagcagtac
gccccgctggttaagcatctcgaagagttacataacctctataaagtgctggataaagcc
cgtgaagaacgcggcgggatctcatttgagagcgaagaagcgaagtttattttcaacgct
gaacgccgtattgagcgtatcgaacagacccagcgtaacgacgcacacaagttaattgaa
gagtgcatgattctggcgaatatctcggcggcgcgtttcgttgagaaggccaaagaaccg
gcactgttccgtattcacgacaagccgagcaccgaagcgataacctctttccgttcagtg
ctggcggaactggggctggaattgcctggcggtaacaagccggaaccacgtgactacgcg
gaactgctggaatcggttgctgaccgtcctgacgcagaaatgttgcaaaccatgctgttg
cgctcgatgaaacaagcgatttacgatccggaaaaccgtggtcacttcggtctggcattg
cagtcctatgcgcactttacttcgccgattcgtcgttatcctgacctgacgctacaccgc
gccattaagtatctgctggcgaaagagcaggggcatcagggcaacaccactgaaaccggc
ggctaccattattcgatggaagaaatgctgcaactgggtcagcactgttcgatggcggaa
cgtcgtgccgacgaagcaacgcgcgatgtggctgactggctgaagtgtgacttcatgctc
gaccaggtaggtaacgtctttaaaggcgtgatttccagtgtcactggctttggcttcttt
gttcgcctggatgacttgttcatcgatggtctggtccacgtctcttcgctggacaatgac
tactatcgctttgaccaggtgggacaacgcctgatgggtgaatccagcggccagacttat
cgcctgggcgatcgcgtggaagttcgcgtcgaagcggttaatatggacgagcgcaaaatc
gactttagcctgatctccagcgaacgcgcaccgcgcaacgtcggtaaaaccgcgcgcgag
aaagcgaaaaaaggcgatgcaggcaaaaaaggcggcaagcgtcgccaggtcggtaaaaag
gtaaactttgagccagacagcgccttccgcggcgagaaaaaaacgaagccgaaagcggcg
aagaaagacgcgagaaaagcgaaaaagccatcggcgaaaacgcagaaaatagccgcagcg
accaaagcgaagcgtgcggcgaagaaaaaagtggcagagtga
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integrated database retrieval system
