Effusibacillus dendaii: skT53_02350
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Entry
skT53_02350 CDS
T06872
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
eff
Effusibacillus dendaii
Brite
KEGG Orthology (KO) [BR:
eff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eff03032
]
skT53_02350 (topA)
03400 DNA repair and recombination proteins [BR:
eff03400
]
skT53_02350 (topA)
Enzymes [BR:
eff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
skT53_02350 (topA)
DNA replication proteins [BR:
eff03032
]
Prokaryotic type
DNA Topoisomerases
skT53_02350 (topA)
DNA repair and recombination proteins [BR:
eff03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
skT53_02350 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
pulA_all-beta
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
BCJ85250
UniProt:
A0A7I8D9P5
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All DBs
Position
225672..227798
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AA seq
708 aa
AA seq
DB search
MADYLVIVESPAKAKTIGKYLGKKYVVKASMGHVRDLPKSQLGVNVKEDFSPKYITIRGK
GDVIKELRDQSKKVKAVYLAADPDREGEAIAWHLANVLEIDPTKECRVVFNEITKDAVQE
SFKHPRKINMDLVNAQQARRILDRLVGYQISPLLWKKVKKGLSAGRVQSVAVRLIVDREN
EIRNFKPEEYWTVTALFESNKQKFSAKFYGYAKNGQAQSAELHNEQEVNELLAHLKGAKY
QIVEVKKSERKRNPSPPFTTSTLQQEAARKLNFRAGKTMSIAQQLYEGIDIGAEGTVGLI
TYMRTDSTRISPTAQAEAKEFITHNYGDAYYPKTVRQYTAKEGAQDAHEGVRPTSVHYHP
DKIKEHLTRDQLRLYRLIWERFVASQMAPAVLDTMTVDIQANDAIFRATGSKIKFPGFMT
LYIEGTDEGKEEDEKFLPPLEKGESLKAPKLDPKQHFTQPPPRYTEARLVKAMEELGIGR
PSTYAPTLETIQKRGYVLLEDKRFVPTELGEIVVQLMKEFFTQIIDVDFTAQLEENLDGV
EEGQVDWVMMLDQFYGDFEKELRVAEEEMKHVTLEEEVSDIPCEKCGRMMVYKHGRFGKF
LACPGFPDCRNAKPILKEVGVACPKCKTGKIVERRGKRRRVFYGCDQYPNCDFILWDRPV
GRDCPTCGQPLVSKRSGKGEGKEMWVCSNTECSHKEEPAVLIESGAAE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
ttggcagattaccttgtaattgtcgagtcacccgcaaaagcgaaaacaattggcaaatac
ctcggcaaaaaatatgtggtaaaagcttcgatggggcatgtccgcgatttgccgaaaagc
caattgggtgttaatgtaaaggaggatttttctcctaaatatatcacaatccgcggcaaa
ggggacgtcattaaagagttgcgggaccagagcaaaaaggtaaaagctgtctatctggca
gccgaccctgaccgggaaggggaagccattgcttggcacctggccaatgtgctcgaaatc
gacccaaccaaagaatgccgcgtggtgttcaatgaaattacaaaagatgcggtgcaggaa
tcgtttaagcatccgcgcaaaatcaatatggatctggtcaacgcccaacaggcaagacgg
attttggaccgtttagtcggctaccaaatctctcccttgttatggaaaaaggtgaaaaag
gggctttctgccggccgtgtgcagtctgttgccgtgcgtttgatcgtcgaccgggaaaac
gagattcgcaatttcaagccggaagaatactggacggtaaccgccctttttgaatcgaat
aagcagaagttttctgccaaattctacggctatgccaaaaatggccaggcacagagcgcg
gaactgcacaacgagcaggaagtcaacgagttgttggcgcatctgaaaggcgccaagtac
cagatcgttgaggtcaagaaaagcgagcgaaaacgcaacccgtctccgccgtttacgacc
agtaccctgcagcaggaagcggcccgcaaactgaatttccgcgcaggaaaaacgatgtcg
attgcccagcagctgtatgaagggatcgatatcggagcggaaggaacggtcggtttgatt
acctatatgagaaccgactcgacgcgtatttctccgaccgcacaggcagaagcgaaagag
tttatcacacataattacggggatgcctattacccgaaaacagtccgtcagtatacggcg
aaagaaggagcgcaggacgctcacgaaggggttcggcctacgtccgttcattaccatccg
gacaaaatcaaagaacatctgacgcgtgatcagctccgcttgtaccgcctgatttgggag
cggtttgtggcgtcgcaaatggcgccggctgttctggatacgatgacggttgatattcag
gcaaacgatgcgatttttcgggcaaccggttcaaaaatcaaatttcctggtttcatgacg
ctctacattgaaggaactgacgaagggaaggaagaggacgaaaagttcctgccgccgctt
gaaaagggcgaatcgttgaaagctccgaagctcgatcccaaacagcatttcacacagccg
ccgccccgctatacggaagcgcggttggtgaaagcgatggaagaattgggcatcggccgt
cccagtacgtatgccccgacgcttgaaacgatccaaaaaagaggctatgtgctgctggaa
gacaaacggtttgtgccgaccgaactgggcgaaattgtggtgcaattgatgaaagagttt
ttcacgcaaatcatcgacgtggatttcaccgcgcagttggaagaaaatctggacggcgtg
gaagaggggcaagtcgactgggtcatgatgcttgaccagttttacggggattttgagaag
gaactgcgcgtcgcggaagaagagatgaaacacgtgacgctggaagaagaggtatccgat
atcccttgtgaaaaatgcggtcgcatgatggtttacaaacacggccgatttggcaagttt
ctggcctgccccggctttccggactgccgcaacgcgaagccgattttgaaagaagtggga
gttgcctgtccaaaatgcaaaacgggcaagattgtggaacggcgcggcaaacgccgccgt
gtgttttacgggtgtgatcaatatccgaactgcgattttatattgtgggaccgtcctgtt
ggccgtgattgtccaacatgcggacaaccgcttgtcagcaagcggagcggcaaaggggaa
ggaaaggaaatgtgggtctgttccaacaccgaatgttcccataaagaagaaccggctgtt
cttatcgagagcggtgcggcagaataa
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