Effusibacillus dendaii: skT53_19320
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Entry
skT53_19320 CDS
T06872
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
eff
Effusibacillus dendaii
Pathway
eff02020
Two-component system
eff02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
eff00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
skT53_19320
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
skT53_19320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eff03021
]
skT53_19320
Transcription machinery [BR:
eff03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
skT53_19320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_23
HTH_3
LacI
HTH_IclR
HTH_31
HTH_17
HTH_21
Sigma70_r4
HTH_Crp_2
HTH_26
MarR_2
HTH_Tnp_ISL3
HTH_24
Arg_repressor
HTH_AsnC-type
Phage_CII
Motif
Other DBs
NCBI-ProteinID:
BCJ86947
UniProt:
A0A7I8DAD5
LinkDB
All DBs
Position
complement(1835701..1837032)
Genome browser
AA seq
443 aa
AA seq
DB search
MQMGYGLWQEQTQKLVMTPELRQAITVLQFSSEELAGYLEAEAVQNPVMELELPDWLAAS
REHALHKPIGAQRETNPLPVESVLRSHQSLEDHLNRQLQLLKLSERELRLASFIVGSLDS
NGYLTMQIDEISHICRCDAEEVEAALQIVQSLEPTGVGARSLSECLWLQALEIKNVPEPV
FQIIENHLPDVAQGRTSRIAAVLGITLQETQRAIDLIRSLDPKPGRWYTTESAAFVVPDV
IVERVAGDYVVIVNDRSTPRLHISDFYRTLLQQQDGSVPSETRDYIVSKLNSALWLLKSM
EQRRQTLYKVTEAIISLQMDFFDGGVAKLKPLTLRDVAERVGIHESTVSRAIAGKYVQTP
QGVYELKYFFDSGVTTSAGEGAAAESVKSLIKSLVDKEDRKEPLSDQKICEILKEKGIRI
SRRTVAKYREEIGIVSSMQRKRY
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatgggatatggtctatggcaggaacaaacgcaaaaacttgtaatgacgcccgaa
ttgcggcaggcaatcacagttttgcagttttcgtcagaagagttggcgggctatttggag
gcagaagcggttcagaatccggtaatggaattggagcttccggattggcttgccgcttcg
cgcgaacatgctctccataaaccgatcggagcgcagcgggagacaaacccgcttcctgtt
gaatcggttttgaggtcccatcaatcattggaagaccatctgaacagacaattacaatta
ttgaaactttctgaacgggaactgcggcttgcttcttttatagttggcagtctggattca
aacggatatctgacgatgcagatcgatgaaatctcccacatctgccggtgtgatgctgag
gaagtggaagcagccctgcagattgtgcaatcgcttgaacctacgggtgtaggagcccgt
tcattgagcgaatgtttatggctgcaagcgttggaaatcaagaatgttcccgaacccgtt
tttcaaataattgaaaatcaccttcctgatgtggcgcaagggcgtacatcacggattgca
gcggtgcttggcattacactgcaggaaacgcaaagagcgatcgatctgatccgttcgttg
gatccaaagccggggcgttggtatacgactgaatcagccgcatttgtcgtaccggatgtg
attgttgagcgtgtggcaggcgattatgtggtcatcgtcaacgatcgatccacacccagg
ctacatatcagtgatttctaccggacacttcttcagcagcaggatgggtcggtaccctcc
gaaacgagagattatatagtcagcaaattgaactccgcattgtggttgctgaaaagcatg
gaacagcggcggcaaactttatataaagtaacggaagcgattatttctctgcaaatggat
ttttttgatggtggcgtggccaaattgaaaccgcttactttgcgtgatgtggcagagcgg
gttgggattcacgaatcgaccgtatcgcgggcgattgcgggcaagtatgtgcaaacgccg
caaggggtgtatgagctaaaatacttttttgactcgggagttactacttctgcaggtgag
ggagcggctgcggaaagcgtcaaatcactgattaaatctttggttgacaaagaggaccgc
aaggaacctctaagtgaccagaaaatctgcgagattctgaaggaaaaagggattcgcatt
tcgcgccgaaccgttgcgaaataccgcgaagagatagggattgtttcatctatgcagcga
aaacggtattga
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