Candidatus Endolissoclinum faulkneri L5: P856_153
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Entry
P856_153 CDS
T04221
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
efk
Candidatus Endolissoclinum faulkneri L5
Pathway
efk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
efk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P856_153 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
efk03021
]
P856_153 (rpoB)
03400 DNA repair and recombination proteins [BR:
efk03400
]
P856_153 (rpoB)
Enzymes [BR:
efk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P856_153 (rpoB)
Transcription machinery [BR:
efk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P856_153 (rpoB)
DNA repair and recombination proteins [BR:
efk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P856_153 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DUF5887
Motif
Other DBs
NCBI-ProteinID:
AHC73391
UniProt:
V9TS34
LinkDB
All DBs
Position
complement(226592..230770)
Genome browser
AA seq
1392 aa
AA seq
DB search
MTVSTVGSFTGCKRVRRNFASIPEVAPMPNLIEIQKSSYEAFLQMGVSGENRSNIGLQEV
FKSIFPIRNFSEQSMLEFVRYTLEDPKYDVEECQQRGLTFSAPLKITLRLVVWHMDEETA
FKSIKDIKEQDVYMGDMPLMTNNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKH
LFAARVIPYRGSWLDFEFDAKDIAYVRIDRRRKLPATTLLFALLSDQSEAYIKNCHATGS
EVQRAKVVGMSAEDILSVFYDKINYVRDGDGWRLPFDANRMKSKKLTDDLIDADTGEVVA
EAGDKITPRTIRKLLENGLKNIFVPSEQLIGQYIGADMIDENSGLVHCDAGEEITNDLLE
VLYSIGVTELTVLAIDHMNFGAYIRNTLAVDKNTTREEALVDIYRVMRPGEPPTLETAEA
LFTGLFFDAERYDLSAVGRVKMNARLLMETDDQLRVLRKEDILAILKVLVDLKDGKGEID
DIDHLGNRRVRSVGELMENQYRLGLLRMERAIRERMSSIDIDTAMPHDLINAKPAVAAVR
EFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIET
PEGPNIGLINSLATYAKINQYGFIETPYRKVKDGLVTNEVCYISAMEEGRYTIAQANTEV
DDDGKFNEELVPVRRRGDFGFARPEDIDMLDVSPKQLVSVAAALIPFLENDDANRALMGS
NMQRQAVPLLQAEAPYVGTGMEAIVARDSGVAIIAKRSGVIDQVDAQRIVILANENLEGT
ASNVDIYQLLKFQRSNQSTCITQQPLVSVGETVKCGDIIADGPSTEMGELALGKNVLVAF
MPWNGYNFEDSILISERIVRDDLFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEETLRN
LDEAGIVYIGAEVNPGDILVGKVTPKGESPITPEEKLLRAIFGEKASDVRDTSLKVPPGV
TGTVVEVRAFSRRGIEKDERSQAIERLEIERLAKDRDDERAILERGFFDRLKKLLLGKIG
ISGPRGFKIGPLTEEVFAKYTPGQWRQLVVEDNQLMDHLESMKENFDKSIEQLNNIFDNK
ANKLHSGDELPPGVMKMVKVFIAAKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLEDGT
PVDIVLNPLGVPSRMNVGQILETHLGWAAANLGRQIRELIETLDQDVRISALRDKLKKIY
SSNEYNQKIACLDDKEIVEMSRNLQHGVPMATPVFDGASEEDIVNMLQIAGLDSSGQVDL
WDGRTGEKFDRRVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGE
MEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYESIVRGEDNFEAGIPESFNVLVKELRS
LGLNVQLNQENQ
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgacagtttccacagtcggctcttttaccggttgtaagcgcgttcgtcgaaactttgct
agtattcccgaagtagcgccgatgccaaatctcatagaaattcagaaaagctcttatgag
gcttttctccagatgggcgtttctggggaaaatcgaagtaatattggtttgcaagaagtt
ttcaagtcaatatttccaattcgcaacttttcagagcaatccatgctggaattcgtacgc
tatactttagaggatcccaaatatgatgttgaagaatgtcaacagcgcggcttaaccttc
tctgctccgctaaagataaccttgcgtttagtggtttggcacatggacgaagaaactgct
ttcaagtcgataaaggatattaaagagcaagatgtctacatgggtgatatgcctttaatg
acaaataatggaacctttataatcaacggtactgagcgtgtaatagtcagtcaaatgcat
cgctctcctggtgtattctttgatcatgacaaaggtaaaacccatagctccggaaagcat
ttgtttgctgcaagagtgattccatatcgcggttcctggctggacttcgaatttgacgcc
aaagacatagcttatgttcgtattgatcgccgtcgtaaattgcccgctacaacgctccta
tttgctcttttgtctgatcagagtgaggcttatattaagaattgtcatgcaacaggaagc
gaggtgcagcgggcgaaggttgtgggtatgagtgccgaggatattcttagtgtcttctat
gataaaataaactatgttagagatggtgatggctggcgactaccctttgacgctaatcgc
atgaagagtaagaaattgactgatgacttaattgatgctgatacaggtgaagtagtagct
gaggccggtgataaaatcaccccgaggactatacgtaaattacttgaaaacggcttgaaa
aacatctttgttccaagtgaacagctaataggccaatatattggcgccgatatgattgat
gagaattccggtctagtacattgcgatgccggcgaggaaattaccaacgatctactcgaa
gtattatattccattggtgttactgagctaacagtcctagcaatcgaccatatgaatttt
ggcgcttatataaggaatactttagctgtcgacaaaaataccactcgcgaagaagcttta
gtcgacatctatagagttatgcgtccaggtgagccaccaacacttgaaactgctgaagcg
ctttttaccggtctattctttgatgccgaacgttacgatctgtctgcagtgggtcgagta
aaaatgaacgctcgtcttctaatggaaactgatgatcagcttcgtgttctccgcaaagaa
gatatattggccattcttaaagtattggttgatttaaaggacggtaaaggagaaattgac
gatattgatcaccttggtaatcgccgggtaagatcagtaggtgagcttatggaaaaccaa
taccgtctgggattgctgcgcatggaacgtgcaatccgcgagcgaatgagctcgatagat
atcgatactgctatgccgcacgacttaattaatgctaagccagcagtagcggcagttcgc
gaattttttggttcatcgcaactttctcaatttatggatcagaccaaccccttatctgaa
atcactcacaaacgtcgcctttcagcgcttggtcctggtgggttaactcgtgagcgtgcc
ggtttcgaagttcgtgatgtacatcccactcattatgggagaatttgtccaatagagacg
ccggaaggcccaaatatcggtctaataaattctttagccacttatgcgaaaattaatcaa
tacggctttatcgaaactccataccgtaaggtaaaggatggtttagtaaccaacgaagtg
tgctatatttccgctatggaagaaggacgttacacgattgctcaagcaaacactgaggtt
gatgatgatggcaagtttaacgaagaattggtaccggttcgccgtcgcggtgactttggt
tttgctcgcccagaagatattgatatgcttgatgtgtctccaaaacagcttgtatctgta
gccgccgcgctaattccttttttagaaaatgatgatgctaatcgcgcactgatggggtca
aacatgcaacgtcaagctgttccactccttcaggctgaagcaccgtatgtaggtactggc
atggaagcgattgtggctcgcgatagtggtgtagctattatagccaaaaggtctggagta
atcgaccaagtagatgcgcaacgcatcgttatcctagctaatgaaaatctagaaggtacg
gcttcgaatgttgatatttaccaattactgaagtttcaacgttctaatcagagcacctgt
ataactcaacagccgctggtatccgtcggcgagaccgttaaatgtggtgacataatagct
gatggcccatctactgagatgggcgaacttgcgcttggtaaaaatgtgcttgtcgctttt
atgccgtggaacgggtataatttcgaagattccattctgatctccgaacgcattgtccga
gatgatttgttcacctcaatccacatagaggaatttgaggttatggctcgcgatactaaa
ctaggtcaggaagaaattaccagagatatcccaaacgttggtgaagaaactttaagaaat
ctagacgaggctggcatagtctatataggtgccgaagttaatccaggcgatatattagtc
ggcaaggtaactccgaagggtgaatctccaataacacccgaagaaaaattactacgtgca
atctttggtgaaaaagcctccgacgtgcgtgatacttccctaaaggtacctcctggagta
actggcactgtcgttgaggttagagcattttctcgtcgaggtattgaaaaagatgaacgt
agccaagctattgagcgtttggaaattgaacgtctcgctaaagaccgtgacgacgagcgt
gcgatattagaacgtggtttttttgaccgtctaaagaaattgctattaggtaaaatcgga
atcagcggtccaagaggatttaagataggtcctctaacagaggaagtttttgctaaatac
actcctggccagtggcgtcagttggttgtcgaagacaaccaacttatggaccatctagag
agcatgaaagaaaattttgacaaatcaattgagcaacttaataatatatttgataataaa
gcaaataaactacacagtggcgacgagcttccacccggcgtaatgaaaatggttaaggta
tttattgcggctaagcgcaagctacagccaggcgataaaatggctggtcgtcatggtaac
aaaggcgtcatttcaaaaattaaccctatagaggacatgccatacttagaagacggtacc
ccagtagatatagtactaaatccactaggtgtaccttctagaatgaatgttgggcaaatc
ttagaaactcaccttggatgggctgcagctaatctaggacgtcaaattcgtgaacttatt
gaaacacttgatcaagatgttagaatatctgctctgcgtgataagcttaaaaaaatatac
tctagcaacgaatacaatcaaaagattgcttgtttagatgacaaagagattgtcgaaatg
tcccgcaatcttcaacacggagtaccgatggcgactccggtttttgatggtgccagtgaa
gaagatatcgttaatatgctacaaattgcagggctcgattcgagcggtcaggtagattta
tgggatggtcgcactggagaaaagtttgatcgcagagtaacagtcgggtatatttatatg
cttaagctacatcatttagtggatgataaaattcatgcacgttccataggtccatacagt
cttgtaactcaacagccattgggcggcaaagcgcaatttggcggccagcgtttcggtgaa
atggaggtctgggcccttgaagcctacggagcagcatatactctgcaagaaatgcttact
gttaaatctgatgacgtatctggtcgtactaaagtatacgaatctatagttcgcggagaa
gacaactttgaagcaggtattccggaatcttttaatgttttggtaaaagaactgcgttca
ctcgggcttaatgtccagctgaatcaagaaaatcagtaa
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