Epinephelus fuscoguttatus (brown-marbled grouper): 125879086
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Entry
125879086 CDS
T08419
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125879086 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
efo03041
]
125879086 (ddx5)
03009 Ribosome biogenesis [BR:
efo03009
]
125879086 (ddx5)
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125879086 (ddx5)
Spliceosome [BR:
efo03041
]
Complex A
U1 snRNP components
U1 related factors
125879086 (ddx5)
Complex B
125879086 (ddx5)
Ribosome biogenesis [BR:
efo03009
]
Eukaryotic type
Pre-60S particles
Helicases
125879086 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125879086
NCBI-ProteinID:
XP_049416679
LinkDB
All DBs
Position
LG19:37158297..37164729
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AA seq
623 aa
AA seq
DB search
MPGYTDRDRGRDRDRDRGYGGGPPRFGGNRGGGGGGKFGNPGERLRKKQWNLDELPKFEK
NFYQQHPDVARRSPQEVEQYRRAKTITFKGRDCPNPIINFHEASFPSYVMDVINKQNWTD
PTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHICHQPFLERGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YVQINIGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCDD
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINF
DYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLISVLREANQAINPKLLQMAE
DRGGRSRGGRGGDYRDDRRDRYSGRRDFGGFRDRDNGRGFDNGPSKAFGTNTQNGGYGGS
NNGGGSSNGFSGSSYNGNGQSNFNNNQAGAFGGQNFQAQQFALGKGGAQAAAAHPQFPFP
QAQAPQQHPPPLVPYPMPPQFSQ
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatataccgacagagaccgcggcagagatagagacagagacagaggctatggc
ggcggtcctcctcgctttggtggcaaccgtggtggaggaggtggaggaaagttcggcaac
cccggtgaacggctgaggaagaagcagtggaacctcgacgagctccccaagtttgagaaa
aacttctaccagcagcatcccgacgttgccaggaggtcgccgcaagaagttgaacaatac
agaagggccaaaacaattacatttaagggaagagactgcccaaatcctattatcaacttc
cacgaggccagctttccatcttatgtgatggatgtgatcaacaaacagaactggactgac
ccaacacccatccaggcccaaggctggcccctggctctcagtggtaaagacatggttgga
attgctcagacaggctctggcaagacgctctcgtatttgttgcctgcaattgtgcacatc
tgccaccagcctttcctggagcgtggagatggtcccatttgcttggtgttagcccccacc
cgtgagctcgcgcagcaggtgcaacaggtggcagcagaatatggcagagcttctcgcctt
aagtccacctgcatctacggtggagcacccaagggaccccagatccgtgacctggaaaga
ggtgttgagatctgcatcgccactccaggaaggctcatcgacttccttgaggcaggaaag
acaaacctgcgccggtgtacttaccttgtgctggacgaggccgacagaatgctggacatg
ggcttcgagccacagatccgaaaaattgtggaccaaatcagacctgaccgtcagactctg
atgtggagtgccacttggcccaaagaggttcgccagctggcagaggacttcctgaaggac
tatgttcagatcaatattggggcgctgcagctcagtgccaaccacaacatcctgcaaatt
gtggacgtctgcaatgatggagagaaggagaacaaactcatccgactgctggaggaaatc
atgagtgaaaaggagaacaagaccatcatctttgtagagacaaagaggcgctgtgatgac
ctcaccaggaggatgcgaagggatgggtggccagctatgggaatccatggagataaaagc
caacaggaaagagactgggttctcaatgagttcaaatacggaaaggctccgattctcatt
gctacagatgttgcctctaggggtctagatgttgaagatgtgaaatttgtcatcaacttt
gactaccccaacaactctgaggactatatccaccgcattggccgcacagctcgtagccaa
aagacaggcacggcttacaccttcttcactccgaacaacatgaggcaggccagtgacctc
atctctgtgctccgcgaggccaaccaggcgatcaaccccaagctcctccaaatggcggaa
gacagaggaggtcgttcaaggggaggcagaggtggcgactatagagatgaccgtcgggat
aggtattctggaaggcgtgattttggcggttttagggaccgtgataacggtagagggttt
gacaacggaccaagcaaagcttttggcacaaacacacagaacgggggctatgggggcagc
aacaatggcggcggcagcagcaacggcttcagcggaagcagctacaacggtaacggacag
tccaactttaacaacaaccaggcgggagccttcggaggccagaacttccaggctcaacag
tttgctctcggtaagggtggtgcacaggctgctgccgcacatccccagttccccttccct
caggcacaggctccgcagcagcatcccccgccgctggtgccgtaccccatgcctcctcag
ttctctcagtaa
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