Epinephelus fuscoguttatus (brown-marbled grouper): 125879756
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Entry
125879756 CDS
T08419
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125879756 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efo03019
]
125879756 (xab2)
03041 Spliceosome [BR:
efo03041
]
125879756 (xab2)
Messenger RNA biogenesis [BR:
efo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125879756 (xab2)
Spliceosome [BR:
efo03041
]
Complex B
Other components
Prp19-related factors
125879756 (xab2)
Complex C
125879756 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
TPR_MalT
TPR_1
DUF2457
SNAP
Motif
Other DBs
NCBI-GeneID:
125879756
NCBI-ProteinID:
XP_049417778
LinkDB
All DBs
Position
LG19:20587228..20598563
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AA seq
860 aa
AA seq
DB search
MSNGYSLQEEMTSLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNM
IYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPGYEEINNCHERALVFMHKMPRIWLD
YCQFLVSQCKITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKL
SPENAEEYIDYLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKV
TSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQV
FDSYAQFEESMIAAKMETTSEMGKDDDDDIDMELRLARFEQLIARRPLLLNSVLLRQNPH
NVHEWHKRVKLYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDAR
TIFEKATKVNYKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEP
VQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFE
ESFKAYERGIALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTI
YLLYAKLEEGYGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKA
IEVLPDEHARDMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHG
NEDTIREMLRIKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQK
AQQLAAEAEQDKAKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDDEDEDDDDQGPE
EVQLEQKSIPTAVFGGLKDD
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacggctattccctccaggaagaaatgacttcgctaaacggaaaacctgatgtt
atgtttgaggacgatgatctgccttatgaagaggagattatcaggaacccatactcagtc
aaatgctggatgcgttacatcgagttcaaacagaatggagccaaatccaccctcaacatg
atatatgaacgggccctgaaagagctgcccggcagctataagctgtggtacaattatctg
agagagagacggaaacaagtcaaggggaaatgtgtcactgacccaggctatgaggagatc
aataactgccacgaaagggcattggtgttcatgcataagatgcctagaatttggctcgat
tactgccagttccttgtgtctcaatgcaagatcacaagaagtcggcaaacatttgaccgt
gcgctcagagctcttcctgttactcagcacccacgcatctggcctctgtatctccgcttt
gttcgtaacctgcccctgcctgagactgccatccgggtgtaccgtaggtaccttaagctt
tctccagagaatgcagaggaatacatagactacttacgatctgttggccgcttggatgaa
gcagctgtgcgactagcagctgttgtcaatgatgaaagctttgtgtccaaagagggcaag
tccaactatcaactgtggcatgagctctgcgacctgatctcccagaaccctgataaagtg
acctctctgaatgttggagccatcatccgagggggcctcactcgcttcacagaccagctt
ggaaaactctggtgctctttagctgactattacattaggagtggtcactttgagaaggca
cgtgatgtgtatgaggaggccatccttacagtggtaacagtaagggatttcacacaagtg
tttgatagttacgctcagtttgaagagagcatgattgcagcgaagatggagaccacctct
gagatggggaaggatgatgatgatgacatagacatggagcttagactcgctcgctttgag
cagttgatagcccggcggcccctcctgttgaacagtgtactactgcggcagaaccctcat
aatgtccatgagtggcacaagcgggttaaactgtatgagggcaatccacggcagatcatc
aacacatacacagaggcagtgcagacagtggatccaatgaaggccacagggaaacctcac
tctctctgggtttcctttgctaaattctatgaggaaaatgagcagctggatgatgccagg
acaatttttgagaaggctaccaaggtgaactacaaacaggtggatgaccttgccgcagtg
tggtgtgaatatggagagatggaactacgccatgagaactatgaacaggcactgcgcata
ctgaggaaagctacagccatcccatccaagaaagcagagtacttcgatgcatctgagcca
gtccaaaacagagtttacaagtccttgaaggtctggtctatgctggcggacttggaggag
agtctgggcactttccagtctacaaaagcagtgtatgatcgcatcattgacctccgcatt
gccacaccacagatcatcatcaactatgccatgttccttgaagagcacaactactttgag
gaaagcttcaaagcatatgagcgtggcattgcgctcttcaggtggccaaatgtttatgat
atctggaacacataccttacaaagttcattgatcgttatgggggcaagaagctggagaga
gccagagatttatttgaacaagctctggatggctgccctgcaaagtttgccaagaccatt
tacctgttgtatgccaagttggaggagggatatggattggcacgacacgccatggctgtt
tatgaaagagcaacgcaggcagtagaaactgaggagagacatcacatgttcaatatctac
atcaagagagcagctgaaatttacggagtcacgtataccagagcaatttaccagaaagct
atcgaggtccttcctgatgagcatgcaagggacatgtgtctgcgatttgctgacatggag
agtaaacttggcgagattgatcgagccagagcaatctactcctactgctcccagatctgt
gacccaagggtgactgcaaacttctggcagacctggaaagaattcgagatccgccatgga
aatgaggacacaattagagaaatgctgagaatcaaacgcagtgtccaagccacatacaac
acccaggtcaactttatgtcctctcagatgctcaaggccacaacaagctccacaggtaca
gtgtccgatctcgctccaggccaaatgggaattgatgacatgaagatgttggagcagaaa
gcacagcagctcgctgcagaagccgaacaggacaaagccaagcctaaagaaaagattctc
tttgtcaggagtgacacctctcgcagtgagttggctgagctttccaagcaagccaatcct
gatgagattgacattgatgatgatgacgaggatgaagatgatgacgaccagggaccagaa
gaggtgcagctagaacagaagagtatccccacagctgtctttggagggcttaaagacgac
tga
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