Epinephelus fuscoguttatus (brown-marbled grouper): 125880198
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Entry
125880198 CDS
T08419
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125880198 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
efo03041
]
125880198 (ddx42)
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125880198 (ddx42)
Spliceosome [BR:
efo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125880198 (ddx42)
Complex B
125880198 (ddx42)
Complex C
U2 SnRNP specific factors
125880198 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
CARF-assoc_HTH
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
125880198
NCBI-ProteinID:
XP_049418475
LinkDB
All DBs
Position
LG19:complement(13043949..13052213)
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AA seq
916 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEEPRLPQSSHTSFGAPGSSGGYGKGQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEV
ENQAAKDMRKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENIDY
DSDGNPIASTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEELSNLTGTQVLELRHKLNLR
VSGAAPPKPCTSFAHFNFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEAGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVR
SIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDITQVVEMLPSPT
DKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGYSLGLLHGDMDQSERNKVIS
DFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TSKDTTFAGDLVRNLEGANQAVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYRE
RPGLGAESSERSSSLLSSTSSFEGYSKPATGAMGDRMSAMKQAFQAQYKSHFVAASSGPP
KLTTKSNSSSCWTSAGSLSSVPTESANGSERSHSAALSMSMSMAGFTSAGSLSSVPVSQT
SSQHSYPLPAPAPQRDIPRDRHGEDRGRHDSYHRHSDRSDRHSGEDRHGDRDRHGDGDRD
RHGDRDRDRYGDRDRYSSSSSRHSDSRNGDGSRRDRDDRRSERDGGDRGSGEGRDRGDDS
FAVPEPPKRRKSRWDN
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggcggtccgggtgtgaagcgagggtttgggtttggaggattttcc
cttgcaggaaaaaaagaggaacctcgccttcctcagtcatctcacacatcatttggagcc
ccaggatccagtggggggtatgggaagggccagcagctcccatcattttacaaaataggg
acaaaaagagctaattttgatgaggaaaatgcgtattttgaagacgatgaagaggagtcc
agcagcaatgtggatctgccatacatcccagctgagaactcacccacacggcagcagatg
cagtccggtggtggatcagacagtgaagatgacccactggatgccttcatggcagaggtt
gagaaccaagctgctaaagacatgagaaaactggaggaaaaggaaaaagagaagaagtca
gccaagggtattcgtgatgacattgaagaagaagatgaacaagaagcctacttccgctac
atggcagagaatcccacagctgggctgacccaagaggaagaggaagaaaacattgactat
gacagtgatgggaacccaattgcttctactaccaagaaaatcatcttgcctcttcctccc
attgaccactcagagattgattacccaccctttgagaaaaacttttacaatgagcatgaa
gagctcagcaacctgactggaactcaagtgttggagttaaggcacaaattgaacctaagg
gtatctggcgctgcccctcctaaaccttgtactagcttcgcccacttcaactttgatgag
cagctaatgcaccagatccgcaagtctgagtacactcagcccacaccaattcagtgccag
ggtgtgcccatagctctgtctggacgtgacatgattggtattgcaaaaacaggcagtggc
aaaactgcagcgtttatctggcccatgctggttcacatcatggaccaaaaggaactggag
gcaggagaagggcccatcgcagtcatcgtgtgtcccaccagagagctttgtcagcagatc
catgcagaatgtaagcgttttgggaaagcctactctttgcgttctgtggcggtttatgga
ggaggcagcatgtgggagcaggccaaagctctgcaagagggagcagagattgtggtgtgc
actccgggtcgtctgattgaccacgtgaagaagaaggccacatccctgcagagagtgact
tacctggtgtttgatgaggcagatcgcatgtttgatatgggctttgagtatcaggtcaga
tctattgccagccatgtccgcccagacagacagacccttttatttagcgctacattccga
aagaagatagagaggctggccagggacatcttggtggatcctattcgtgtggttcaggga
gacatcggagaggccaatgaggacatcacccaagtggtggaaatgctgcccagcccaaca
gacaaatggggctggctcacccggcggctggttgagtttacctcctccggctcagtcctc
atcttcgtcaccaagaaggcaaactgtgaagaactggctactaacctgacccaggagggc
tacagcctgggcctcctgcatggagacatggaccagagtgagaggaacaaggtcatcagc
gacttcaagaaaaagaatttgcctgttctggtggccactgatgtagctgctcgtggtctg
gacatcccatccattcgcacagtggtaaactacgacgtggcacgagacattgacacacac
acacacaggattggtcgtactggccgtgctggagagaagggcgtcgcttacactctcctc
accagcaaagacaccacgttcgctggcgaccttgtgagaaatctagagggagctaatcaa
gcagtttctaaagaactgatggatttagcgatgcagaatccttggttcaggaagtcccga
ttcaaaggtggtaaaggaaagaagctgaatattggaggaggtggtcttggttacagagag
agaccaggcctgggggctgaaagttctgaacgtagcagcagcttgttgtcttctacgagt
agctttgaaggctacagcaaaccagccactggggcgatgggagatcgcatgtctgcaatg
aaacaagccttccaggctcagtataagagccactttgtggctgcatccagcggccctcca
aagctcaccactaagtctaacagctcgtcatgctggaccagtgccggcagcctgagctct
gtgccaactgagtccgccaacggctcagagcggtctcacagcgctgccttgtccatgtcc
atgtccatggctggcttcactagcgccggctccttgagctctgtgcccgtcagtcaaacc
agttcacagcacagctaccctctgcctgcgcctgctccacagagagacatcccaagggac
agacacggtgaggacagagggcgccacgacagttaccaccgccacagcgacaggagcgac
cgacacagtggagaggaccgacatggagaccgtgatcggcatggagacggagaccgggat
cgccatggagacagagatcgtgaccgctacggggaccgggaccgctacagcagcagcagc
agtcgccacagcgatagtcgtaatggagatggaagcaggagagacagagatgatcggagg
agtgagagggacgggggagacagggggagtggggaggggagggacagaggagatgatagt
tttgctgtccctgaaccaccaaagcgtagaaagagcaggtgggacaactaa
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integrated database retrieval system
