Epinephelus fuscoguttatus (brown-marbled grouper): 125881324
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Entry
125881324 CDS
T08419
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125881324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
efo03041
]
125881324
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125881324
Spliceosome [BR:
efo03041
]
Complex C
Other components
Step II factors
125881324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
TsaE
PhoH
ABC_tran
Sigma54_activ_2
RSRP
Motif
Other DBs
NCBI-GeneID:
125881324
NCBI-ProteinID:
XP_049420391
LinkDB
All DBs
Position
LG20:complement(32434727..32454334)
Genome browser
AA seq
1226 aa
AA seq
DB search
MADIGVDELSQLEYLSLVSKVCTELDNHLGISDKDLAEFVINLAEKQPTFDGFKALLLQN
GAEFTDSLISNLLRLIQTMRPPSKASTSKASEALVKPKSEKERLKEMFPALCRANDPAPK
RLLDEDDVKVAADAMKELEMFMPSVSGTDSKSSKSRSEKSRRHSRSRSRSRERDRHRDRD
RDRDRDRDREKDRKRRHRSRSRSRSRSRDRDRHRDGDRDRDRDRDRGKRRDKSSRWSERS
PSPRKDQDRDSDRWKDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLV
HISELRREGRVANVADVVSKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVG
PDGGEEISMRNPDRPSNLNLGHAPELEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKE
EFPDFDDETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQ
AAMMQSALAKERRELKQAAREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPND
IPEWKKHAFGGNKASYGKKTQLSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGK
TTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSP
ETVIKYMTDGMLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLI
VTSATLDAVKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPG
DILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRK
VVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRT
GPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETL
ITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLDCSEEMLTIVSMLSV
QNVFYRPKDKQALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRR
AQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVY
IHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKK
QQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggcagacattggagttgacgagctctcgcagcttgaatatttgtctctggtgtccaag
gtgtgcacggagctcgacaaccatctgggaataagtgacaaagatttagctgaatttgtc
atcaacctcgctgaaaaacaaccgacatttgatggattcaaagcgcttttgctccaaaat
ggagctgaattcacagattctctcatcagtaatttactcagactcattcagactatgcga
cctccgtccaaggcatcaacgagtaaagcctctgaggctttggtcaagccgaagtcagaa
aaggagaggctgaaggagatgtttcctgcgctgtgtagagcaaatgatccagcaccaaag
aggctactagatgaagatgatgtgaaagtagcagctgatgccatgaaagagctggagatg
tttatgcccagtgtgagtggaacagactccaaaagcagcaagagcaggtcggagaagagc
aggcgccacagccggagtcgcagcagaagcagagaaagagacagacacagagatcgagac
cgagaccgagaccgagacagagatcgcgagaaagacaggaagagacggcatcgttctcgc
tccaggtccaggtctcgctccagagaccgggatcgacacagggacggagacagagataga
gatagagacagggatcgtggtaaaagaagagacaaatcctctcgctggtctgaacgctcc
ccgagccctagaaaagaccaagacagagactctgaccgctggaaggacaaacatgtggac
cgcccaccaccagaggaaccttctgttggtgacatctacaacggcaaagtcaccagtatc
atgcagtttggatgctttgttcagctggaggggttaaggaaacgatgggagggtttggtc
cacatttctgagctgcgtagagagggccgtgtggccaacgtggccgatgtcgtcagcaaa
ggccaaagagtgaagatcaaggtgctctcatttacgggctctaagaccagcctcagtatg
aaggatgtggatcaggagaccggagaagacctgaaccccaacaggaggaggaacgtaggc
ccggacggaggagaggagatctccatgaggaaccccgacaggccaagcaacctgaacctg
ggccacgctcctgagctggagcaggacgacaccttggagcgcaagaggctcaccaaaatc
tctgaccctgagaagtgggagatcaaacagatgattgctgccaacgtcttgtccaaagaa
gagttccccgattttgatgacgagacagggattcttcctaaagttgatgatgaagaggat
gaagatttggaaatcgagctggttgaagaggagcctccgttcctgaggggacacaccaaa
caaagcatggacatgagtcctgtcaagattgtcaagaatccagatggctctctgtctcaa
gcagccatgatgcagagcgctctggctaaggagagacgagagctgaagcaggctgctcga
gaggcagagatggactctatccccatggggctgaataaacactgggtcgacccgctgcca
gacgttgatggtaggcagattgctgctaacatgagaggcattggcatgatgcccaatgac
atcccagagtggaagaagcacgcttttggaggcaacaaggcctcttacggaaagaagacc
cagctctccatcctggagcagagggagagcctgcccatctacaagctgaaggagcagctc
attcaggctgttcatgacaaccagatcctgattgtgattggagagacgggttccggtaag
accacacagatcactcagtacctggcggaggcaggttacaccaccagggggaagattggc
tgcacgcagccccgtcgtgtggccgccatgtccgtggctaagagagtctctgaggagtat
ggttgctgtctgggacaagaggtgggttacaccatccgttttgaggactgcaccagccct
gagacggtgatcaagtacatgacggacggtatgttgttgagagagtgtctgatcgactct
gaattgggccagtacgccatcatcatgttggacgaagctcacgagagaaccatccacact
gatgttctctttggtctactcaagaagactgtacagaaacgcacagacatgaagctgatt
gtgacgtcggccacgctggacgccgtgaagttctcccagtatttctacgaagctcccatc
ttcaccatcccaggaagaacgtatccagtggaggttctttacaccaaagagcctgagaca
gactacctggatgctagtctcatcacagtcatgcagattcatctgaccgaacctccaggt
gacatcctggtgtttctgactggacaggaagagatcgacacggcttgtgagatcctgtat
gagaggatgaagtcactggggcctgatgttcctgagctgattattctgccagtttactcg
gccctgcccagtgagatgcagaccaggatctttgaccctgcaccgccaggcagcagaaag
gttgtcatcgccacaaacattgcagagacctctctgaccatcgatggaatctactatgtc
gtggatcctggttttgtcaagcagaaagtgtacaactcaaagaccggcattgaccagctg
gtggtgactcccatctcacaggcccaggccaagcagagggcgggtcgagctggcagaaca
ggtccagggaagtgttacagactctacactgagagagcctacagagacgagatgctgacg
accaacgtgcctgagatccagagaaccaacttggccagcactgtgctgtctctgaaggcc
atgggcatcaatgacctcctgtctttcgacttcatggacgctcctcccatggagactctg
atcacagccatggagcagctctacactctgggagctctggatgatgaaggcttactcaca
cgtctggggaggaggatggctgagtttcctctggagcccatgttgtgtaagatgttaatc
atgtccgtccatctggactgcagtgaagagatgctcactatcgtgtcaatgctgtctgtg
cagaacgttttctacaggccaaaggacaagcaggccctggccgaccagaagaaggcaaag
tttcaccagcctgagggagatcatctgacgctgctggccgtctacaactcctggaagaac
aacaagttctccaacccctggtgctacgagaacttcatccaggcccgctccctgcgcaga
gctcaggacatccgcaaacagatgctgggtatcatggacagacataaactggacgtggtg
tcttgtggcaaagccacagtacgagtccagaaagccatctgcagtggcttcttcaggaat
gcagccaagaaggatcctcaggagggctaccgcaccctgatagaccagcaagtcgtgtac
atccacccctccagtgctctgttcaaccgccagcctgagtgggttgtgtaccacgagttg
gtgctgaccaccaaggagtacatgcgagaggtgacgaccatcgaccctcgctggctggtg
gagttttcgcccgccttcttcaaagtgtccgaccccacgcgcctcagcaagcagaagaaa
caacagcggctcgagcctttgtacaaccgctacgaggagcccaacgcttggagaatatct
cgcgccttcagacgccgttga
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integrated database retrieval system
