Epinephelus fuscoguttatus (brown-marbled grouper): 125882067
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Entry
125882067 CDS
T08419
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125882067 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
efo00536
]
125882067 (col11a1a)
Glycosaminoglycan binding proteins [BR:
efo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125882067 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
125882067
NCBI-ProteinID:
XP_049421663
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All DBs
Position
LG21:29365589..29475004
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AA seq
1804 aa
AA seq
DB search
MEMQRWSTRWKTKRWLMDSTVTAFITLSLVLQATNVRAAEPVDVLKVLEFQNYPEGVTKT
SGLCTNRRASKPDSAYRVAKQVQISAPTTQLFPGGDFPEDFSILTTVRPKSGLQSFLLSI
YNQQGVQQLGVEVGRSPVFLYEDQTGKPAPEDYPLFRTLNLADGKWHRVAISVEKQTVTI
IVDCKKKITKPLLRSDHGSISTNGITVFGTRILDEEVFQGDIQQLLIVADPKAAYDYCEH
YSPDCDTPHSDSLQAQEPEEEYTTDLDYSQFYDYSEGATDIIPTDEYSEPQPNNVGDYNT
DFDYGTVDGTHTQSPFATSGPDEAVEEDVVGAYVTDATPIGLEPIVPSTVDNTGAEAYDF
KEYDLKEYDLGEVDNRLYDYGAYDEYGTAPPRPTAVYDDEVGPGVAAETDISSVAGAAGA
FGQKGEKGEPAVIEPGMLIEGPPGPPGPAGLPGPSGLQGPPGPAGDPGDRGPPGRAGLPG
ADGVPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPAGPMGLTGRSG
PVGLPGPPGLKGESGDPGPQGPRGIQGPSGQPGKPGKRGRAGADGARGMPGETGSKGDRG
FDGLPGLPGEKGHRGEPGPMGPTGATGEDGQRGEDGEIGPRGLAGESGPRGLLGPRGPPG
PPGSPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEKGPQGRSG
LPGLPGADGPPGHPGKEGPAGEKGAQGPSGPQGPIGYPGPRGVKGADGVRGLKGSKGEKG
EDGFPGFKGDMGIKGDRGELGMLGPRGEDGPEGPKGRAGPTGESGPIGAAGEKGKLGVPG
LPGYPGRQGPKGSSGFPGFPGANGEKGARGIAGKPGPRGQRGPTGPRGARGARGPTGKPG
PKGTAGNDGPPGGPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG
PPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGSSGKDG
PPGLRGFPGERGLPGATGPAGLKGGEGPQGPPGPVGSPGERGPAGSAGPIGLSGRPGPQG
PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEPGQKGSKA
DKGEQGPPGPAGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGSRGFPGPPGPIGLQG
LPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGSVGEKGEQGEAG
NPGPPGEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPGDPGPPG
EPGVAGTDGESGEKGEDGEAGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKG
EAGAEGPAGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMGPPGLPG
LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGKGDSGISGASGPLGPPG
PPGLPGPQGPKGSKGSSGPAGAKGDTGSIGPPGPPGPPGEVIQPLPIQSPKKTKRSSDMQ
SDAAAAIMDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPEFPDGEY
WIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKEVPGTWFSEFKRGKILS
YVDVDGNSINMVQMTFLRLLTASARQNFTYSCHQSVAWHDATSDSYDKALRFLGANDEEM
SFDNNPYIKALSDGCATRKGYGKTVMEINTPKIDQVPIIDVMLTDFGDPNQKFGFEVGPV
CFLG
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaaaggtggcttatggattccact
gtaaccgcattcatcactttatcattggttctacaggctactaatgtcagagcagcagag
ccagtggatgtgctaaaagtattagaatttcaaaattaccccgaaggagtgacgaaaaca
tcaggactttgcacaaaccgaagagcatcaaagccggactcagcttacagagttgccaag
caggtccagatcagtgcccccaccacgcagttgttccctggaggtgattttcctgaggac
ttctccatcctgaccacagtacgccccaaatcaggcctccagtccttcttgctgtccatt
tacaaccagcagggagtccagcagctgggtgtggaagtgggacgttcacccgtcttcctg
tatgaggatcagactggcaagccagcgccggaggactaccctctgttccgtactctcaac
cttgctgacggaaagtggcatcgtgtggccatcagtgtggagaagcagacggtcaccatc
atcgtagactgtaagaagaagatcaccaagcctctcctcaggagtgaccatggttccatc
agcactaatggcatcactgtgttcggcactaggatccttgatgaggaggttttccagggt
gacatccagcaacttctgatcgtggccgatcccaaagcagcttatgactactgtgaacat
tacagcccagactgtgacactccccacagtgattccctgcaggcccaggagccagaggaa
gagtacactactgatttagattactctcagttctatgattactctgaaggagccacagac
atcattcccaccgatgagtattctgaaccacagccaaacaatgtaggagattacaataca
gactttgactacggaactgtagatggtactcatactcagtccccctttgccacgagcgga
cctgatgaggctgtggaggaggatgttgtcggtgcatatgtcaccgatgccactcccatt
ggcctggaacccattgtcccaagcacggtggacaacactggtgcagaggcgtatgacttt
aaggaatatgacctaaaggagtatgacttgggcgaggttgacaacaggttgtatgattac
ggggcgtatgatgagtatggcacggccccgcccagacccacggcagtctacgacgatgag
gtggggcccggggttgctgctgaaactgatatttcttccgttgctggtgctgcaggagcc
ttcggccagaagggagagaagggcgagccggctgtcattgaacctggcatgctgattgaa
ggaccaccaggaccccccggcccagctggtctcccaggtccctctggcctacaaggaccc
ccaggccctgctggagatcctggtgacaggggtcctcctggtcgtgctggtctgcctggt
gctgatggtgtgccaggtccccctggtaccatgctgatgctgccgttccgtttcggcggg
gatggtgagaaggggccagtggtgtctgcccaagaagcccaagcccaggccatcctatcc
caggccagactggctatgaggggacctgcagggccaatgggtctgacaggaagatcgggg
ccagtgggtctacctggtcctcctgggctgaaaggtgaaagtggagaccctggtcctcag
ggtccccgtggcatccaagggccttcaggacaacctggcaaacctggcaagaggggccgt
gctggagctgacggggcccgtggaatgcccggagagacaggctccaagggtgacagaggg
tttgatggactgcccggactgcctggtgagaaggggcacaggggggagccagggccaatg
ggacccacaggtgccactggagaggatggacagagaggcgaggatggagagatcgggccc
cgaggattagctggcgagagtggtcctcgaggtttgctgggtccccgtggtcctccagga
ccccctggatctcctggtgtcgctggagttgacgggcctccaggtcccaaaggaaacatg
ggaccacaaggagaaccaggcccacccgggcagcagggaattccaggaacacagggtctt
cctggtcctcaaggccccatcggaccacctggtgaaaaaggacctcagggcaggtcgggg
ttgcctggattacctggagctgacgggcctcctggtcatcctggtaaggagggtccagct
ggagagaaaggagcccagggtccctcaggtccacagggtcctattggttatcccggccct
cgtggtgtcaagggtgctgatggtgtccgtggtctcaaggggtcaaaaggagagaagggt
gaggatggtttcccaggtttcaagggagacatgggaatcaaaggagaccggggtgagctt
ggtatgcttgggccccgtggagaggatggtcctgagggtcccaaaggtcgagctggcccc
actggagagtccggtccaattggtgccgctggagagaagggtaaactgggcgttccagga
ttgccaggttatccaggaagacaaggacctaagggctcgagcggcttcccagggttccct
ggagccaacggcgagaaaggagccaggggcatcgcaggcaaacctggtccaagaggacaa
agaggtccaacgggtcctcgtggggcacgaggagccagaggtccaacaggaaagcctggt
cccaagggcacagcaggaaacgatgggccacctggcgggcctggtgagagagggcctcaa
ggacctcagggaccagtgggcttccctggaccaaagggcccccctggaccacctggaaag
gatgggctgcccggacaccctggtcagcgtggagagacgggtttccaaggaaaaactggt
ccacctggtccaggaggtgttgtcgggccccagggaccaactggagagactgggcccgtt
ggtgagagaggacaccctggacccccgggcccacccggagagcagggtcttccaggtgct
gctggcaaagagggagccaagggagaccctggaccacagggatcctctggtaaagacggt
ccccccggccttcgtggcttccctggagaaagaggtttacctggcgccacgggtccagca
ggtctgaagggaggagaggggccccaaggtccacctggtcctgttggttctcctggtgaa
agaggtcctgctggttcagctggtccaattggcctgtctggtagacctggccctcagggt
cccccgggtcctgctggagaaaagggagcacctggcgagaaagggcctcaaggtcctgct
ggtcgtgacggcgtccagggtcctgttggtctgcctggacctgctggacctcagggtcca
cctggagaggatggtgacaagggagaggttggagagcccggtcagaaaggaagcaaggcc
gacaagggagaacagggtcctcctggtccagctggtcttcaaggtcccattggtgcccca
ggtcctgctggagccgatggagagcctggtccccgaggtcagcagggtatgtttggacag
aagggagatgaaggttcaagaggtttccctggacctcctggtcccatcggtctgcagggg
cttcctggacctcctggtgagaagggagagaacggtgatgttggccccatgggtcctcca
ggtccccctggtcccagaggtcctcagggtcctagtggagctgatggtccacaaggccct
ccaggtggtgtcggccccatgggatctgtgggtgagaagggtgaacaaggtgaggctgga
aacccaggaccaccaggagagcctggaactgggggacctaaaggcgagagaggagagaaa
ggagaggctggcccccctggagctgctggacctgccggtgccaaaggaccccctggagat
gacggtccaaagggcaaccctggtcctgttggattccctggagaccctggtcctcctgga
gagccaggtgttgctggcactgatggagaatcaggagagaagggagaggatggtgaggcc
ggtcagccgggacctccaggtccatcaggagaagctggcccacctggaccacctggcaag
agaggacctccgggggctgctggtgcagagggcaggcaaggagagaagggcgctaagggt
gaggcaggtgccgagggtcctgcaggtaaaacaggaccagtcggacctcagggaccttca
ggaaagcccggtccagagggtctgcgtggaatccccggccccgttggtgaacaaggactg
cccggcgccccaggacaagatggtccacctggtcccatgggtcctcctggtcttcctggt
ctgaaaggtgaccctgggtctaaaggtgaaaagggtcatccaggtttgatcggtctgatc
ggacctcctggtgagcaaggagagaagggagaccgaggtttgcccgggccccaaggttct
cccggtggcaagggcgacagtggtatcagtggagcctctggtcctctcggtcccccaggt
cctcctggtctgcctggtcctcaaggtcccaaaggatccaagggttcaagtggtcccgct
ggtgccaaaggagacactggttcaatcggtcctcctggtcctcctggcccaccaggtgaa
gttatccagcctctgcccatccagtcacccaaaaagaccaagcgctccagtgacatgcag
tcagacgcagccgccgccatcatggattacggcgagggcatggaggacatcttcggctca
ctcaacaacctcaaacaggacatcgaacgcatgaaataccccatgggcacacaaaacaac
cctgccaggacatgcaaagatctgcagctctgccacccagagttccctgatggcgaatac
tggattgatccgaaccaaggctgctccggggattccttcaaagtctactgtaacttcacc
gccgggggcgaaacctgcatctatccagataagaagtctaacggagtcagaatatcctcg
tggcccaaagaagttcctgggacatggttcagtgaatttaaacgtggtaaaatactttcc
tatgttgacgtcgatggaaactcaataaacatggtgcagatgaccttcctcagactactg
acggcctcggccaggcaaaacttcacctacagctgccaccagtctgtggcgtggcacgac
gccaccagcgacagctacgacaaggcgctgcgcttcctgggcgccaacgatgaggagatg
tcctttgacaacaacccttacatcaaggccctctcagacggatgtgcgacgaggaagggc
tacggaaagactgtgatggagattaatactcccaaaatcgatcaggttccaatcatcgat
gtcatgttgactgactttggggaccctaaccagaagtttgggtttgaagttgggcccgtc
tgcttccttggctaa
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integrated database retrieval system
