Epinephelus fuscoguttatus (brown-marbled grouper): 125882990
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Entry
125882990 CDS
T08419
Symbol
cnot4b
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125882990 (cnot4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
efo03000
]
125882990 (cnot4b)
03019 Messenger RNA biogenesis [BR:
efo03019
]
125882990 (cnot4b)
04121 Ubiquitin system [BR:
efo04121
]
125882990 (cnot4b)
Enzymes [BR:
efo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125882990 (cnot4b)
Transcription factors [BR:
efo03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
125882990 (cnot4b)
Messenger RNA biogenesis [BR:
efo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125882990 (cnot4b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125882990 (cnot4b)
Ubiquitin system [BR:
efo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125882990 (cnot4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-UDP
zf-RING_2
Rtf2
DZR_2
zf-C3HC4
zf-CCCH_2
Torus
Motif
Other DBs
NCBI-GeneID:
125882990
NCBI-ProteinID:
XP_049423031
LinkDB
All DBs
Position
LG22:complement(32060593..32109609)
Genome browser
AA seq
801 aa
AA seq
DB search
MSRNPDLKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNEKKQKITENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKMNPTFLQTSTVSGDKPKGKANSLQRSNSSSKDGRMTNGLSSDHRRSPPLDGSDS
DHLTPEGPEPDLSHGPVPALSPFSSNSDLTSPSIKLTDIISIGNGETSQLLPSSDSPSPP
PGLTKPSLVVPISVTGHMACSPFEVAAAESQSLFSDNSNFRHPNPLPSGQSGFPSSPHSN
ADWPTAPEPQSLFTSDTMPVSSSTDWQAAFGFGSSKQQQEDDLGFDPFDITRRALADLIE
KELSVEDSRGSSRSPGSFSHRTHGPLLNKGLGPPGRLPLPNHLSPSHHFSQHQHPHRGDF
SSFSFPPHPSSSSSSSSSSSCSSSSSSSSSSSASCGSWMGSTSSRSNFVHLNHTVSLTAS
KSHSGFLDLTVLPGHHSTGLGGIPITENSSCGESINVKEWQDGLRALLPNININFGGLPN
PSSSSSSSSSSSSSVNHTGAPGLSGSISHSLCWDSTARWMDPAIITGIPTSSGNGVDSIQ
DDNPPHWLKSLQTLTEMDAPPSSATQNGSFGSQPPPHRAAWAHYPAPTSRFHSPPPGFQT
AFRPPTQTQTDLLQSAGIDRH
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggaaccccgacttgaaggacgacccaatggagtgcccactgtgtatggaaccg
ctggagatcgatgacgtcaacttcttcccctgcacctgtggataccagatctgtcgcttc
tgctggcatcgaatcaggacagacgagaacggtctctgtcctgcctgcagaaagccgtac
ccagaagacccagcagtgtacaagccgctgtcacaggaggagctgcagaggataaagaat
gagaagaagcagaagcagaatgagaagaaacagaagatcacagagaacagaaaacattta
gccagcgtccgagtggtccagagaaacctggtgtttgtagtggggctgtctcagaggctg
gctgaccctgaggttctaaagaggccggagtattttgggaaatttgggaagattcataaa
gttgtgatcaacaacagcacatcatacgctggctcacaggggcccagtgccagtgcctat
gtcacatatattcgctctgaagacgccctcagagcaatccaatgtgtcaacaatgtagtg
gtcgatggcagaacacttaaggcttctttaggaacaacaaaatactgcagttacttttta
aagagcatgcagtgccccaaaccagactgcatgtatctacacgagctgggggatgaagct
gccagttttactaaagaggagatgcaggcaggaaagcatcaggagtatgagcagaaatta
ctacaagacctctacaaaatgaacccgaccttcctacagacctccactgtgtcaggggac
aagccaaagggcaaagccaactctttacagaggtctaacagctccagtaaagacgggagg
atgaccaacggtctgtcgtcagaccacaggaggagtccgccattagacggctcagactct
gatcacttgacccctgaggggcctgaacctgaccttagccatggccctgtaccggccctc
tcccctttctcctcaaacagtgacctcaccagccccagcatcaagctgacagacatcatc
agcataggcaatggtgaaacctcacaactgctccctagcagtgactctccatcgccccct
cctggccttactaaacccagcctggtggttcccatcagtgtcacaggacacatggcttgc
tccccatttgaagtagctgctgcagagtcccagtcgctgttctcagacaacagtaacttc
aggcatccaaacccactccccagtggacagagcggcttcccaagttctccacacagcaac
gctgactggcccactgcaccagagccacagagcctcttcacctcagataccatgccggtg
tcgtcgtccacagactggcaggcggcgttcggcttcggctcgtccaaacagcagcaggag
gacgacttgggcttcgacccttttgacatcactcgcagggctctggctgacctcatagag
aaggagctctctgttgaagacagccgcggctcctcccgatcacccggctcattctcccac
agaacccatggacccctgctaaacaaaggcctcgggcccccaggaaggctcccactcccc
aaccacctctcaccctctcaccatttctcccagcatcagcaccctcacaggggagacttc
agctccttcagcttcccccctcacccttcatcatcatcatcatcatcatcttcatcctcc
tgctcctcttcctcctcgtcctcctcctcttcctcagcatcttgtgggtcctggatgggt
tccacctcctcacgcagtaactttgtgcatttgaaccacacggtcagtctgacagcctcc
aagtcacacagcggcttcttggacttgacagtgctgccaggacatcacagtactgggctg
ggaggaatccccatcacagaaaacagcagctgtggagagagtataaatgtcaaagagtgg
caggacggcttgagagcactgttacccaacatcaacatcaactttggaggactacccaac
ccctcgtcttcctcatcatcatcatcttcttcttcatccagcgtcaaccacacaggagca
ccggggctctctgggagcatttctcacagcctctgctgggacagcacagctaggtggatg
gacccagccatcattacagggatcccaacctccagtggcaacggtgtggactctattcaa
gacgacaatcccccacactggctcaagtccttgcagacgctcacagaaatggacgccccg
cccagctccgccacacaaaatggctctttcgggagccagccacccccccacagagccgcc
tgggcacactacccggccccaaccagccggttccactccccaccaccaggcttccagaca
gccttcagacccccaacacagacccagacagatctgctacagagcgccggtatcgaccgc
cactag
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