Epinephelus fuscoguttatus (brown-marbled grouper): 125883066
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Entry
125883066 CDS
T08419
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
efo03016
]
125883066 (rtcb)
Enzymes [BR:
efo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
125883066 (rtcb)
Transfer RNA biogenesis [BR:
efo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125883066 (rtcb)
Prokaryotic type
tRNA splicing ligases
125883066 (rtcb)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
125883066
NCBI-ProteinID:
XP_049423145
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All DBs
Position
LG22:3877248..3882265
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKISSNCWRIKKGFVPNMQVEGNFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMGDPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HIVDGKQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagttataatgatgagctgcagtatctggataaaatcagcagcaactgttgg
aggattaaaaaaggtttcgtgcccaacatgcaggttgagggaaacttctacgtgaacgac
gctctggagaaactgatgtttgaggagcttcgtaacgcctgtcgaggaggaggtgtggga
ggattccttccagccatgaaacaaatcgggaacgtggcagcgctgccggggatcgtacac
aaatccatcggtctccctgatgttcactctggatatggatttgcgatcggaaacatggcg
gccttcgacatgggcgaccccgatgctgtggtgtctccaggcggtgttggttttgacata
aactgcggcgtccgtcttctgaggacgaacctggacgagggagacgttcagccggtgaag
gagcagctcgcccagtcgctgttcgaccacatcccagtgggcgtcggatccaagggagtc
atccccatgggggccaaggacctggaggaggctctggagatgggcgtggactggtctctg
agggagggctacgcctgggcagaggacaaggagcactgtgaggagtacggcaggatgctg
caggccgaccccaacaaagtgtcctccaaggccaagaagagaggcctgccgcagctgggg
acgctgggagcaggaaaccactacgctgagatccaggtggtggacgagatctacaacgac
tacgccgccaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagc
ggcagcagagggctcggacaccaggtcgccacagacgctctggttgccatggagaaggcg
atgaagagagataagatcacggtgaacgaccgtcagctggcctgcgctcgcatcacgtca
caggaaggacaggactacctgaagggcatggccgctgcaggaaactacgcctgggtcaac
cgctcgtccatgaccttcctcaccagacaggccttttccaaagtgttcggcacgacgccg
gacgacctcgacatgcacgtgatctacgacgtctctcacaacatcgccaaggtggaggag
cacatcgtggacgggaagcagaagactctgctgatccaccgcaaaggatccacccgagcg
ttccccccacaccacccgctcatccccgtagactaccagctcacaggtcagccggtgttg
atcggagggacgatggggacctgcagctacgtcctcaccggtacagaacaaggcatgacg
gagacattcggcaccacctgtcacggagcgggtcgcgctctgtctcgagcaaagtcccgc
aggaacctggacttccaggacgtcctggacaaactggctgatcagggcatcgccatccgg
gtggcttcacccaaactggtcatggaggaggcgcccgaatcatacaaaaacgtgacagac
gtcgtcaacacgtgtcacgacgctggcatcagtaagaaggcaatcaaactgcgaccaatc
gccgtgattaaaggctga
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