KEGG   Epinephelus fuscoguttatus (brown-marbled grouper): 125883528
Entry
125883528         CDS       T08419                                 
Symbol
lsm6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
efo  Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03018  RNA degradation
efo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:efo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125883528 (lsm6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    125883528 (lsm6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:efo03019]
    125883528 (lsm6)
   03041 Spliceosome [BR:efo03041]
    125883528 (lsm6)
Messenger RNA biogenesis [BR:efo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     125883528 (lsm6)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     125883528 (lsm6)
Spliceosome [BR:efo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    125883528 (lsm6)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 125883528
NCBI-ProteinID: XP_049423813
LinkDB
Position
LG3:22890141..22893895
AA seq 80 aa
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKY
GDAFLRGNNVLYISTQKRKV
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtctcagaaagcagaccccgagcgacttcctgaagcagataattgggagacctgtg
gtggtcaaactgaactctggtgtcgattacagaggtgtcctggcctgcctggatggttac
atgaacattgccatagagcagactgaggagtatgtcaacggacagctcaagaacaagtat
ggagatgcttttctaagaggaaacaatgtcctttacatcagcactcagaagaggaaagtg
tag

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