Epinephelus fuscoguttatus (brown-marbled grouper): 125883550
Help
Entry
125883550 CDS
T08419
Name
(RefSeq) ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125883550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
efo03041
]
125883550
03009 Ribosome biogenesis [BR:
efo03009
]
125883550
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125883550
Spliceosome [BR:
efo03041
]
Complex A
U2 snRNP components
U2 related factors
125883550
Complex B
125883550
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
125883550
Ribosome biogenesis [BR:
efo03009
]
Eukaryotic type
90S particles
Helicases
125883550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
nSTAND3
AAA_29
AAA_25
Motif
Other DBs
NCBI-GeneID:
125883550
NCBI-ProteinID:
XP_049423876
LinkDB
All DBs
Position
LG23:complement(23493699..23536893)
Genome browser
AA seq
759 aa
AA seq
DB search
MLKRHRLDLGDACSLDKRRSCDGRDRDRDRERDERSRDRDRDRDRDRDRDRDVKSSGVPN
ILTAGGGVFLKQTPFQQQINPFTNLPHTPRYYEILKKRLQLPVWEYRESFTDILMRNQSF
VLVGETGSGKTTQIPQWCVDMVRSVPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQE
VGYSIRFEDCSSAKTVLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVL
KEVVRQRADLKVIVMSATLDAGKFQVYFDHCPLLTIPGRTHPVEIFYTPEPERDYLEAAI
RTVIQIHMCEGDEGDILLFLTGQEEIDEACKRIKREVDDLGPDVGDIKIIPLYSTLPPQQ
QQRIFEPPPPNKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESL
LVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKK
LGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVI
ASCEFNCSNEVLSITAMLSVPQCFVRPTEAKKVANESKMRFAHIDGDHMTLLNVYHAFKQ
NHDSTQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFSSRDYYTNIRRALVTG
FFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPE
WLVKIAPQYYEMSNFPQCEAKRQLERIIAKISSKEYTQY
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagcggcatcgtttagatttgggtgatgcttgctcgctggataaaaggagatcc
tgtgacgggcgtgatcgcgatagagacagagagcgcgatgaacggtcgagggacagggac
cgtgaccgggatcgagaccgtgacagggacagagatgtgaagtcatccggggtgcccaac
atcctaactgcaggcggtggggtcttcctcaagcaaaccccctttcagcagcagatcaac
cccttcaccaacctgccccacacgccacgctactatgagatcctgaagaagcggctgcag
ctgcctgtgtgggagtacagagagagcttcactgacatcctgatgcggaaccagtctttt
gtgctggtgggagaaacaggctctgggaaaaccacacagatccctcagtggtgtgtggac
atggtgcggtcagtgccgggaccaaagagagccgtggcctgcacccagcccaggagggta
gcagccatgagcgttgcccagagggttgctgatgaaatggatgtcatgctgggccaagag
gtgggctactccatcaggtttgaggactgcagctctgccaagacggtactcaagtacatg
acagatggaatgttgctgcgggaggccatgaatgatcccctgctcgagcgctacggtgtc
atcatcttggacgaggcacacgaacgcacattagccacagatatcctcatgggggtcctc
aaggaggtggtccgccagagggctgacctcaaggtcatcgtcatgagcgccacgctagat
gccggcaagttccaggtgtactttgaccactgcccgctgctcaccatccctggacgcacg
caccctgtggagattttttacacgcccgagcctgagcgggactacctggaagcggccatc
cgcaccgtgatccagatccacatgtgtgagggggacgagggggacattctgcttttcctc
actggacaagaggaaattgatgaagcttgcaagcgaatcaagcgggaggtcgacgacctg
gggcctgacgtcggcgatatcaagatcatcccactgtactccacacttcctccacagcaa
cagcagaggatctttgagccacccccacccaataaaccgagtggtgccatcggaaggaag
gttgtcgtgtcaacaaacatcgccgagacatccctgaccattgacggcgtggtgtttgta
atcgatcctggatttgccaagcaaaaggtgtataacccacgaatcagagtggaatccctt
ttggtcacagccatcagtaaggcctcggcccagcagagggcaggtcgtgctggacgaaca
cgcccaggaaagtgcttccgcctttacacagagaaagcttacaagacagaaatgcaggac
aacacgtatccagagatcctgaggtctaatctgggctctgtggtgctgcagctgaagaaa
ctgggtattgacgacctggtgcactttgacttcatggacccaccagccccagagaccctg
atgagagccctggagttgctgaactacctggcagcgctcaatgacgacggcgacctgacg
gagctgggctccatgatggcagagttccccctggacccccagctggccaagatggtcatc
gccagctgtgaattcaactgctcgaacgaggttctctccatcactgccatgttgtcagtc
ccacagtgcttcgtccgacccacggaggctaagaaggtggccaacgagtccaagatgcgc
tttgcccacatagacggggaccacatgacgctgcttaacgtctaccacgccttcaaacaa
aaccacgactccactcagtggtgctacgacaatttcgtcaactaccgctcactgatgtca
gcagacaacgtacggcagcagctgtccaggatcatggaccgcttcaacctgccgcggcgg
agcaccgagttcagcagcagagactactacaccaacatccgccgagcgctggtcactggc
ttcttcatgcaggtcgctcacctggagcgcacgggccattacctgacagtgaaggacaac
caggtcgtacagctgcacccttccactgtgctggatcacaagccagagtgggtgctttac
aacgagtttgtgctcaccacaaagaattacatccgcacgtgcactgacatcaaaccagag
tggctggtgaaaattgccccgcagtactatgagatgagtaacttcccccagtgtgaagcg
aagagacagttggagcgtatcattgcaaaaatctcatccaaggaatacactcagtactaa
DBGET
integrated database retrieval system
