Epinephelus fuscoguttatus (brown-marbled grouper): 125884103
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Entry
125884103 CDS
T08419
Name
(RefSeq) ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125884103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
efo03041
]
125884103
03009 Ribosome biogenesis [BR:
efo03009
]
125884103
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125884103
Spliceosome [BR:
efo03041
]
Complex A
U2 snRNP components
U2 related factors
125884103
Complex B
125884103
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
125884103
Ribosome biogenesis [BR:
efo03009
]
Eukaryotic type
90S particles
Helicases
125884103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
nSTAND3
AAA_29
AAA_7
T2SSE
RSB_motif
Motif
Other DBs
NCBI-GeneID:
125884103
NCBI-ProteinID:
XP_049424859
LinkDB
All DBs
Position
LG3:18921601..18930991
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDRDRDSKPPSVP
SNSTAPVPCLAPIKQMAMQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKESFSDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYTNIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMSNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgcttggacttgggtgatgactactcctctagtaagaagaggtct
gaagggagagacagggaccgggacagagaccgcgaggatcgctccagggacagggaccga
gatagggaccgggacagggacagagaccgggatagagactcgaagcctcctagtgtcccg
tctaacagcacggcacctgtaccatgcctggcgcccatcaagcagatggctatgcaacag
cagatcaacccattcaccaatctgccgcacacgccgcgcttctacgagatcctgaagaag
aggttacagcttccggtgtgggagtacaaggagagcttcagcgatatcatcacacgtcat
cagagctttgtccttgttggtgaaactggttctgggaagacaacacagatcccacagtgg
tgtgtggacatggtgagaggtttgcctggtcctaagcgggcagtagcctgtactcagccc
aggagagtggcagctatgagcgtagctcaaagggtggcagacgaaatggacgtcatgctt
ggacaggaagtcggctactccattcgatttgaggactgcagctctgctaaaacaattctc
aagtacatgacagatggtatgttactaagagaagctatgaatgacccactgctggagcga
tatggtgtcatcattctggacgaggcccacgagcgaactctggccacagacatcctgatg
ggagtactcaaggaggtggtgcgtcaaagaccggatctgaaggtgatcgttatgagtgcc
acgctagatgccggaaagttccaagtgtactttgacaactgtcctctcctgactatcccc
gggcgtacacaccctgtagagattttctacactcccgaaccagagcgggactatctcgag
gcagcgatccgcactgtcatccagattcatatgtgtgaggaggacgaaggtgactgcctt
ctctttctcaccggtcaggaggaaattgatgaggcctgcaaacggatcaagcgtgaggta
gatgaccttggacctgaagtcggagacatcaaaatcattccactgtattccacattgcca
ccacagcagcagcaacggatcttcgagcctcctcctccgaggaagcccaatggtgcaata
ggaagaaaggttgtggtgtcgacaaacattgctgagacctctcttacaattgatggtgtg
gtgtttgtcatcgatcctggatttgccaagcaaaaggtttacaatccccgtatcagagtt
gagtctttgcttgtgacggccatcagtaaagcttctgcccagcagagggcgggacgagct
ggcagaacacgtccaggaaaatgtttccgcctgtacacagagaaggcctacaaaacagag
atgcaggataacacctaccctgagattcttcgatccaacttgggatctgttgtgctgcag
ctgaaaaagctgggtatcgatgaccttgtgcactttgacttcatggatccaccagctcca
gagacgctgatgagggcccttgagctgctgaattacctggctgctctcaacgatgacggt
gacctgacagagctcggctccatgatggcagagtttcctttggacccccagctggctaag
atggtcattgccagctgcgagtttaactgctctaacgagatcctttccattactgccatg
ctgtcagtcccacagtgttttgtccgccccacggaggctaagaaggcagcagacgagtcc
aagatgaggtttgctcacatcgacggagaccacttgacgctgctcaacgtctaccacgcc
ttcaaacaaaaccacgagtccaaccagtggtgctatgacaactttgtcaactatcgttca
ctgatgtctgctgacaacgtgcggcagcagctgtccaggatcatggaccgcttcaacctg
ccgcgccgaagcacagagttcaccagcagagattactacaccaacatccgccgagcgctc
tgcaccggcttcttcatgcaggtggctcatttggagcgcacaggtcattacctcacagtc
aaagacaaccaagtggtccaactgcacccatccacagtcctggaccacaagcccgagtgg
gtgctctacaacgaatttgtcctcaccaccaaaaactacatccgcacttgcacagacatc
aaaccagagtggctggtgaagattgcaccgcagtactatgaaatgagtaacttcccacaa
tgtgaagctaagagacagctggagcgaatcattgccaaactagagagcaaggagtattcc
cagtactga
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