KEGG   Epinephelus fuscoguttatus (brown-marbled grouper): 125884483
Entry
125884483         CDS       T08419                                 
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
efo  Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo04382  Cornified envelope formation
efo04510  Focal adhesion
efo04512  ECM-receptor interaction
efo04518  Integrin signaling
efo04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:efo00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125884483 (col4a6)
   04518 Integrin signaling
    125884483 (col4a6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    125884483 (col4a6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125884483 (col4a6)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    125884483 (col4a6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:efo04147]
    125884483 (col4a6)
   00536 Glycosaminoglycan binding proteins [BR:efo00536]
    125884483 (col4a6)
Exosome [BR:efo04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   125884483 (col4a6)
Glycosaminoglycan binding proteins [BR:efo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   125884483 (col4a6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 125884483
NCBI-ProteinID: XP_049425492
LinkDB
Position
LG23:19504634..19638796
AA seq 1711 aa
MKFLICVVAVALAVRSAHGGVGKSDEPCSGQDCSGGCRCNPEKGSRGRPGPLGEVGQSGP
EGPRGGPGPTGPKGEKGHIGLKGPSGPKGDKGPMGVPGFQGSDGVPGHPGQEGGRGPPGL
DGCNGTRGEPGAPGYGTGGPGYPGPAGPNGQKGQKGEPRYISDGGVSYIPGLQGIKGQSG
ITGPNGPPGYPGPRGPEGYPGPPGPPGLPGPMGSRSDGYEGEKGDKGDVGLPGDPGQPMI
NGVVEFVGFPKGDKGMQGEPGRKGIRGYPGNPGRPGPFGYRGEYGEKGIPGYPGARGPPG
FNGPPGSPGQQGLRGVPGYPGQEGYIGPKGDQGDPGPPGPPAYVSGHGTSVQGPTGDPGF
SGLPGSPGDQGPPGFPGSPGPPGIGGVGPGGRGSPGFPGTPGPKGEKGNPGIPGYGFEGS
PGSPGLPGPPGPPGLQGPASFSIEPCVIYPEPRPEGIPSTSTPGEPGPPGPRGPPGERGF
NGFRGDPGDCACLGGGTSGLPGLPGSPGANGSPGFPGQKGEPGERGSPGFNGVQGPPGRA
GSPGFFGRKGEKGASYYPNLGIGVKGELGATGPRGPTGETGKPGRDGLPGFPGAPGPPGD
AGYGTVGEKGFPGFPGPKGRAGGPGEPGIGYSGTPGFRGEPGDPGIPGVPGAPGLPGPKG
ENSCEGVNDAGEGTGQVLPCSIPGEQGDPGFPGLPGRPGSKGEPGQPGGRGRPGFDGAKG
ERGDPGFGGQPGPQGFPGPRGDPGAPGIPGQSFDGGRGKDGAPGRPGAKGQPGEVLGATP
GSPGQNGLPGLPGDKGQPGTPGGPGLPGGDGRSGVPGLKGERGVDGYPGSPGLPGLPGEP
TFGIPGLPGSPGAKGLSGPPGFPGRKGDRGDSGFPGPAGMKGTPGLPGTPGSPGPRGPPG
PPGPGTVEGIPGIPGRKGERGFPGVMGFPGLPGRPGSPGFSGGKGSSGGPGRDGLPGGPG
YPGQKGERGYPGPPGLPGVPFRSEFVERGEPGTPGSSGLPGFPGPRGDKGLPGTPGRQGL
PGLPGFAEQSKGQPGQPGFPGQPGTPGFLGPKGEAGIMGFPGMSGPRGDDGAPGLPGNPG
EFGRPGGKGAPGESYGYPGAPGPKGQPGNPGFPGGRSNDGAPGENGFPGSPGFPGAKGAP
GEAGRPGIMGSPGFPGPKGQAGYPGRRGADGPPGLPAGPGGPGAKGVPGPPGLDGLNGLG
GPKGLPGTPGGSVGGRPGAPGIPGLKGERGISYPGGPGYPGSKGERGDSGGPGRPGFPGR
PGPPGPTVGSDIPGPLGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDSGLPGFPGS
PGRKGDSGIPGGPGLPGSSGFKGGRGETGFSGGPGLKGFPGDPGFYGSKGPKGFRGRTGR
KGLPGVTLPMVPRDYERPYGEMGYPGAGGSNGAPGESGQPGIPGRPGPKGRPGSVGKLGR
TGSPGLPGSLGDGGPPGFPGPTGEQGPPGAAGRPGPPGGVGRSYSIGYTLVKHSQNSQVP
MCPQGMAKLWDGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYASRND
KSYWLSTTAPIPMMPVAEEQIRPYISRCSVCEAPSQAVAVHSQDMTIPTCPPGWRSLWIG
YSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVEPS
QEFVYSPLQETLKGGQERSKVSRCQVCSKLL
NT seq 5136 nt   +upstreamnt  +downstreamnt
atgaaattcctgatttgtgtagtagcagtcgccttggcggtgagatctgcgcacggaggt
gtggggaagtctgacgagccgtgtagtggccaggactgtagcggaggatgcaggtgcaac
ccagagaaaggcagcaggggtcgtccagggcctctcggtgaagttggtcagagcggacca
gaggggccacgtgggggcccggggcctacagggcctaaaggagagaagggccacattgga
ctaaagggaccatctggccccaaaggagacaagggacctatgggagtgccaggattccaa
ggaagtgatggagtacctggtcacccgggtcaggagggtggcagaggcccaccaggactg
gacggttgtaacgggaccagaggagagcctggagcaccgggctatgggacaggaggacct
ggatatcctggacctgctgggcctaatgggcaaaagggtcagaaaggagagcctagatac
atctcagatggtggtgtctcgtatataccaggtttacaaggaatcaagggtcagtcgggt
atcacaggtcctaatggtccgcctggttatcctggtccaagagggcctgagggatatccc
ggcccacctggtcctcccggtctcccagggccaatggggagccgtagtgacggatatgaa
ggagagaaaggagacaagggcgacgtgggcttgcccggtgaccccggccagccaatgatc
aatggcgttgtggagtttgtgggttttcccaaaggagacaaaggaatgcagggtgaacct
ggtcgaaagggaatcagaggataccctggcaatcctggccgacctggacctttcggctat
cgtggtgaatacggagagaagggcattcctggataccccggtgcaagaggtcctcccggg
tttaacgggcctcctggatctccaggacaacagggactcagaggtgttccaggttacccc
gggcaagaaggatacatagggcccaagggagatcagggagaccccggaccaccaggacca
cctgcatacgtttctgggcatggcacttctgttcaaggaccaacaggtgacccaggtttc
agtggcctgcctggttcccctggtgaccagggacctccaggattcccaggatcaccaggc
ccaccaggaattggtggagttggtccaggtggtcgtggatccccaggttttcctgggacc
ccaggcccaaagggagagaaaggaaacccaggcataccaggttatggcttcgaaggaagc
cctggctcccctggactccccggccctcctggccctcctggacttcagggcccagctagc
ttttccattgaaccctgcgtcatctatcctgagcccaggcccgaaggtattcccagtacc
agcaccccgggagagcctgggccacctggccccagaggaccgccgggtgaaagaggattc
aatggcttcagaggtgatcccggcgactgtgcctgtctaggtggaggcacctctgggttg
cctgggttacccggaagtcctggagctaacggcagccccggcttccctggacaaaagggt
gagcccggtgaacgcggttcacctggctttaatggtgttcagggacctcctggtcgtgct
ggtagccctggtttctttggtcgtaagggagagaagggcgcatcttattaccccaacctg
ggtatcggggtgaaaggagagctcggagcaactggacccagaggaccaacaggtgaaact
ggaaaacctggcagggatggactccctggcttccctggagcccctggacccccaggcgac
gctggttatggcacagttggagagaaaggtttcccagggttcccggggcctaagggtcgt
gcgggcggccctggcgagcctggtatcggttatagcggaacacccggctttcggggagag
cctggagaccccggtatacccggggtgccaggggcaccaggtttacccggacctaaaggt
gaaaacagctgcgaaggggttaatgacgccggagagggaacgggccaagtgctgccatgc
tccatacctggcgagcaaggagaccctggcttccccggtctaccaggacgaccaggttct
aaaggtgagccaggacagccaggaggccgtggacgtccagggtttgatggtgccaaagga
gagagaggagaccccggttttggaggccaacctggaccacaaggtttccctggacccaga
ggagatcctggagctccaggtattccaggacagagttttgacggaggcagggggaaggat
ggtgccccagggcgtcctggagccaagggccagcctggagaggtactgggagctacacct
ggttccccaggacagaacggtttaccaggactccctggagacaagggccagcctgggacg
ccaggaggacctggattacctggtggtgatggacgtagtggtgtccctggactgaaggga
gagcgtggagttgatgggtatcctggtagtcccggccttcctggtcttccaggtgagccg
acctttggcattcctggtctgcctggatctcctggcgccaagggactgagcggaccacca
ggtttccccggtcgaaaaggagacagaggagactcaggtttcccaggacctgctggaatg
aagggaactccaggactgccaggcacccctggatcaccagggcccaggggaccccctgga
cccccaggaccaggaactgtagagggaataccaggaataccaggaaggaagggcgagaga
ggtttcccaggagtgatgggtttccctggactaccaggtcgtcctggaagcccagggttt
tctggagggaaaggatcgtctggagggccaggaagagacggactacccggcggtcccgga
taccccggacagaaaggtgagagaggatatcctggcccccccggcttgcccggtgtccct
ttccgatcagagtttgtggagagaggagaacctggaacccctggcagtagcggccttcct
ggcttccctggacccagaggtgacaagggtctgccaggtacacctggtcgtcagggtctg
cctggacttcctggtttcgctgagcagagtaaaggacagccgggacagcctgggttcccc
gggcaaccaggaactccaggcttcctcggaccaaagggagaagctggcatcatgggattc
cctggcatgtctggaccaaggggtgatgatggtgctcctggtttaccgggcaaccctgga
gagttcggtcggcctggtggcaaaggtgcacccggagagagttatggttatcctggagcg
ccaggacctaaaggccagccaggaaacccaggcttcccaggtggacgtagcaatgatggc
gcacctggtgaaaacggttttccaggaagtccaggtttccctggagcgaagggagctcct
ggtgaagcaggacggcctggaataatgggctcccctggtttccccgggccaaagggccag
gctggctacccaggaagaagaggagcagatgggcctcctggtctgcctgcaggtcctgga
ggtcctggggccaaaggtgtgcctggaccccctggtttggatggacttaatggcctaggt
ggacctaaaggcctccctggaaccccaggtgggagtgtaggaggtcgcccaggagctcct
ggtattccagggttaaagggagagagaggcatctcctacccaggaggtccaggctaccct
ggatcaaagggagagagaggagattcaggtggtcctgggcgcccagggttccctggtcgg
cccggacctcctggtcctactgtggggtcggatatccccggacctttgggagaccccggc
cttcctggactggatggagagtatggattccaaggtcctccaggtcctcccgggcctcct
ggtccaggcacagcccagggagacagaggtgactctgggctcccaggcttccctggctcc
cctggcaggaaaggagactcaggcatccctggaggccccggacttccaggcagctctggt
ttcaaaggaggacgaggtgagactggcttcagtggaggtcctggtctcaagggcttcccc
ggtgaccctggtttctatggaagcaaaggaccaaagggatttcgagggcgtactggtcgt
aagggtctccccggagtcacgctgcccatggtgccacgagattacgagcgaccctacgga
gaaatgggttatcccggtgcaggcggaagcaacggtgcccctggagaatctggtcagcct
ggaatacctggacgtccaggtcctaaaggtcgtcctggttctgtgggcaaacttggcagg
actggatctcctggtctgccaggatccctcggtgatggcggaccccctggtttccctgga
cctactggagaacaaggtccccctggtgcagctggacgtcccggcccccctggcggtgtc
ggccgcagttacagcatcggatacacgctggtgaagcacagccagaactcccaggtcccc
atgtgtcctcagggcatggccaagctgtgggacggatacagtctgctgtacgtggaggga
caggagaaggcacacaaccaggacctcggtcagccagggtcgtgcctccccaggttcagc
accatccccttcctgtactgctcccccaacgaggtctgctactacgccagccgcaacgac
aaatcctactggctctccacgaccgcacccatacccatgatgcctgtggccgaggagcag
attcgaccttacatcagcaggtgttctgtgtgtgaggctccatctcaggctgtggccgtc
cacagtcaggacatgaccatccccacctgtcctcccggctggaggagtctctggatagga
tactccttcctcatgcacacagcagctggcgccgagggcggcggtcagtccctggtgtct
cccggctcctgtctggaggatttccgcgcaacaccgttcatcgagtgcaacggagccaag
ggcacctgccactactttgccaacaagtacagcttctggctcaccacggtggagcccagc
caggagtttgtctattcgccattacaggagaccctgaagggaggccaggagcgctccaaa
gtcagccgctgccaagtctgcagcaagctcttgtag

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