KEGG   Epinephelus fuscoguttatus (brown-marbled grouper): 125884484
Entry
125884484         CDS       T08419                                 
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
efo  Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo04382  Cornified envelope formation
efo04510  Focal adhesion
efo04512  ECM-receptor interaction
efo04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:efo00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125884484 (col4a5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    125884484 (col4a5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125884484 (col4a5)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    125884484 (col4a5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:efo04147]
    125884484 (col4a5)
   00536 Glycosaminoglycan binding proteins [BR:efo00536]
    125884484 (col4a5)
Exosome [BR:efo04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   125884484 (col4a5)
Glycosaminoglycan binding proteins [BR:efo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   125884484 (col4a5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 125884484
NCBI-ProteinID: XP_049425496
LinkDB
Position
LG23:complement(19448411..19501300)
AA seq 1682 aa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NT seq 5049 nt   +upstreamnt  +downstreamnt
atgaataaagacttgaagagcctgcgacagctcgccgtgccgctgctcttcctcgccctg
tgcgtcgcggtgcagcgatccgactctgcggcttgccatggatgtgtgggatccaaatgt
gactgcagtggagtgaaaggaagcaagggtgagcggggtttcccaggtctcaccggacag
ccaggagttccaggattccccggacctgagggacccattggacccagaggagagaagggt
agcgatggacctcaaggacttattggcgcaaaaggaataagagggccacctggattgcca
ggatttccaggaacgccaggacttccaggtctgcctgggcaggatggacctccagggccg
agaggagtgcccggatgcaacggaacaaagggtgaacggggtttcccaggaacttcagga
attcctggacagccaggacgacagggtccacctggtctgccaggacaaaagggtgaccca
ggcgatgtgatctccaccaatcgttttggagaggatggaccagtgggattacccggaccg
ccaggagttcctggacctcctggaccacaaggtttgcagggtccactcggccctccagga
cccagaggtcttgagggtcgtccaggtcctccaggtcttcctggaccaaagggaaacatg
ggactgaacttccaaggacccaaaggagagaagggtgaaccaggtctgccaggacctcct
ggtcctcccgggcaagtgggagaacagaagaggccacctgagacggagattcagagagga
gacaagggtgatccaggaatcccaggccccccaggtgatccaggctacccaggacctcct
ggtccatctggaggacagaaaggagaaaagggagaaccaggggaagcaggcaaaagaggc
aaaccaggcaaagatggcgaccctggaactccaggcttccctggaatcaaaggagaccca
ggcctgccaggtcctccaggcagggatggagagagaggcttaaaaggtgatcgtggatac
ccaggcccaccgggagtggtgcttggcggacaagcaggaagtcaggtcggccctaaaggt
gagcccggattccccggagcacctggagtcaaaggagatagagggccacaaggtttaaca
ggacctccaggagcaccaggacttccaggtatcggtggtggtggtcagcctggatctcca
ggcttcccaggagagaggggtcagaagggagacatcggcgctccagggctgtctttgcca
ggtccccctggacgttcagggtctcctggtgcccagggtccaccagggcttcctggacct
ccgggcttttccacggcaggacaaaactgcgtcgctggagagcccgggcgtcccggtgtg
cagggagagagaggttaccccggagaggcaggacagaaaggtgagaagggagacacctgt
gtgaactgctttggcggtaccactggcatcccaggacccccaggaccagcaggacagccc
ggattccccggttctcctggtagcccaggtatcaaaggagacagaggatacccaggaaca
cctggtagcattggaccacctggttcccctggtcctcaaggtgctccaggattcgcagga
gagaagggagacccaggcgatgccatcacagtcagcggtgtgaggggagataagggtgac
actggcttccctggaccacccggtctgcccggtctggacggtcgccccggtcgtgacgga
cagcctggagcccctggacccaaaggagctcctggctctctgctggtgaaaggagaacgt
ggtatccctggtgagccaggtccccaaggtatcccaggagacagaggtcctccaggaagc
cctggctttggacctcagggacctccaggagagaaaggtgtccagggcgtctcaggaaga
cctggcggacctggtgcacctggtgctaaaggtgaaccaggcctcacagtgtccgagaaa
ggcttaccaggacccagaggactggatggagagccaggactgcctggatcaccaggtaac
ccaggtcagcccggacagaatggtttccctggtttaccaggagcgaagggtgaccctgga
ctcccaggcattggacttccaggacccccaggcgttaaaggtttcccaggtatccctggc
cagccaggatctcctggaggaccaggaagaccaggagtggatggactccccggccagcct
ggattccctggaccaaagggtgagcctggctttggccttcctggacccccaggtttgcca
ggagtgcctggatctaaaggtttccctggaccaaagggagatcctggtttccctggcagc
cccggttcacccggacgatctggatttgatggcggaccgggagctaaaggtgagcccggt
agccctggtatacctggagctcgtggcccacctggatctgccacaaccggctcactgggg
cagccaggcccccctggacctcctggaccaatgggaccaccaggattccctggatcaaac
ggagagaagggagaccctggtcctccaggtctagacatcccaggtctgccaggagacaga
ggtagccccggtttcccaggttccccaggaccagctggaaccccaggacctcctggagga
cctggacgggatggcctgcctggactgccaggttcgaaaggagacatgggtcctatggga
cctccaggaccttctggagggccaggaggaccaggagggcctggtgctcctggacttaaa
ggtgagcctggattcccgggtagagacggaggacccggcagtcctggtggtaaaggagag
agaggtgaccctggtgtccagggacccccaggagccagcctgccatcagcggccacaaag
ggagccaaaggagatcctggactaccaggtgccccaggtcttccaggtcagaaaggtatc
cctggtctcaacggtgaccccggactgccaggatcagatggacgccctggactccccgga
ccttcaggtcctaagggagatcctggcatcccaggaggcccaggtgctcccggaagtcca
ggaccaaagggtggcatgggagaaatgggatttccaggaccgtcagggcagaagggtctg
ccaggtacgccaggtaggccaggatcccccggacagccaggaggacctggtttccctgga
gctaaaggtgaaccaggctctgctggaattggaccaccaggacagtccggacccaagggt
gaaccaggccagccagggttcccaggaagtccaggacttaaaggaagtccaggagcaccc
ggtcttccaggtttaccaggaggaccaggttccaaaggcgaccccggactcccaggattc
caaggtcctcccggcgtccctggtcccaagggtctcgatggtgggcccggtgccccaggt
ctcactggcgcgcctggtagaccaggagagtctggccgaccaggaggaccagggttgcca
ggagagaagggtcaggcaggtcgggacgggatcccaggaccagctggagtcaaaggagag
ccaggacttcctggttatggtggtcctggtccttctgggcttccagggttgccgggtgca
aagggagacccaggtcttcccggcccatctggcagtcccggtttccctggcactaaagga
gaggctggtttccccggtgcacccggcccagcaggcaacactggccctcctgggcctcca
ggactggctcttcaaggccccaaaggactccaaggaccccctgggccacctggaagagca
ggtgcacccggaccagagggtccccgtgggcctccaggaagtggcggcattaagggagag
aaaggtattcccggagctcctggccagccgggcttccccggacagaagggagagagtggc
actcctggattcccgggtccctctggtcttcccggtagtcctggtctgaagggagatatt
ggtctgcctggtgttcctggattccctggaccaaagggagactcaggaattcctggcagc
agcggccttcccggagaccctggagatatcggacccgttggcccccctggtgaccccggt
gtacctgcagctcccattgtggtgaagggagagcgaggaccccctggtcctcaaggcctg
cccggtggtcggggactccctggtccttctgggcgtgacggagttccaggtctgcctggt
gatcctggggatcctggtccagagggtcctcctggcttcagcggcccacccggcaggaag
ggagacaacggacccgctggtcagcctggtcagcgtggctaccctggtccccctggttca
gatggtccacagggtcttcccggtcccccgggctcagtctctgcagcccacggcttcctc
atcactcgccacagccaaggtcaggacgtgcccttctgtcccgacggaactaacctcatc
tacgacggttactccctgctgtacgtgcagggcaacgagagggcgcacggccaggacctt
ggcacggccggcagctgtctgcgcaggttcagcaccatgcccttcatgttctgcaacatc
aacaacgtctgcaactttgcctcccgcaacgactactcctactggctgtccacgccggag
cccatgcccatgtccatggcccccatcactggagagggcatcaagccgtacatcagcagg
tgtgcagtgtgtgaagctccagccatggtgatcgcagtccacagtcagaccatccagatt
cccacttgccctttgaattgggaagctctgtggataggatactccttcatgatgcacacc
agtgcaggtgcagagggctccggtcaggccctggcctcccccggctcctgcctggaggag
ttccgcagcgcgcccttcatagagtgccacggcagagggacgtgcaactactacggcaac
tcgtacagcttctggctggccactgtggaaccctctgagatgttcaggaagccccagtca
gagactctcaaggcgggtaacctacggacacgcgtcagccgttgcgtggtctgcatgaag
aggacgtaa

DBGET integrated database retrieval system