Epinephelus fuscoguttatus (brown-marbled grouper): 125884724
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Entry
125884724 CDS
T08419
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125884724
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125884724
NCBI-ProteinID:
XP_049425808
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Position
LG3:15138713..15164019
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AA seq
1618 aa
AA seq
DB search
MDNLITAQTDSSGGSAGGSSRGDLSLSAGGSGETAASGGSGGTSSSVLITSSSSGGSGGS
GASKGTGGISITSLGASSAISSGGGGSAASGGSGAGAGLKAAKGKREGGLGAVTVSTVTK
TGYGSEGSGEAKRGSSSAVTYSPVPKERKNMTTMATALSDVFDESSSTNSSPEYNRKEYG
ISSSVSRGRTQSRESQIRARLQSASPPASWTELDDVKRLLRGNNSPSTSPTQSPNNTLPI
PKKASMETRTMSESSTADHYGSIWSGGVSSGYSYNTNPNNLSTTSILYPSGAQNNLTLGS
PSMSSLSVSSTVPVYGVQNNLVSTTPTVLSPTGTNAQIVYGVQKNATSTAISPITVRPSS
PISDEASGKDFKFVLIEKENTPVKKDTERLVMTKDTGKTFLSAAPVSASAAYSGDSLQRE
KQKLASNTTEEGTDAAVLKVATKDKATYAEIRKDDSPFSFCSCCSWWKWLLGLLLSLLLL
LGLLFGLIALAEEVKRLKNRVDALEAITSTTSARSSRLSASSTGVNIIDPLDSAYIDRSS
AGSALTPSDNGIYLGAAGPGGGAGTEPGQDSAALQRAVQQLVRAELRSSALRETLAHSLK
GERGDPGPKGDQGLLGQKGDSGFPGMPGLPGPMGHPGLDGPRGLKGNAGEPGPEGPAGQR
GRDGPMGPRGEAGAPGFGEKGDKGSQGEAGHPGPAGTPGPVGPKGAMGDQGATGSPGAPG
PMGLQGEAGAPGTKGDRGTPGLSGIKGDQGERGSRGPAGEPGQPGPQGPAGPRGSKGTTG
DTGLMGLPGVRGSPGIPGDVGPPGEPGPPGKVIAPIGSNTVAIPGPPGPAGPPGPAGTHG
LSGPVGPPGIPGQPGPQGERGEKGEKGDQGKPGEPSSVITSETVSSTRRDRLSSVAPLPG
PPGPPGPPGAPGPQGPPGEAKQGPPGRRGPVGEPGIGLPGPPGEKGEPGSFVPTSETFFA
GPPGPAGPPGPQGSPGDRGLQGYQGEPGQPGLPGRPGEPSTGFPGHPGPRGPPGLPGPEG
PEGPDGPPGPEGPEGPEGPQGPKGDAGIPGALGIPRASSGGSFSHGAPGPPGPPGPPGPP
GRDGSGSGSTDVSQHIAEYLQSGGIRQYLAGPPGPPGPPGLPGAPGALGPAGDRLVDDVA
NRVISYIQAPGREQERDRIPGPPGPPGAPGSISVNDIISLLQREDVRRHIGGTPGPPGPP
GAPGLGSSRFNTQEVAERVLALMNEKGVVGPPGPPGSPGLPGLPGNVLSTEHQALVGPQG
PPGSPGIPGPQGPPGPAGPPGPAGPLSPTGFGNYITPEIHDYLQSVAFRGLPGLPGPPGP
PGPEGPPGQVHGLVSYAEHANRETLKAEQQQYLNGDRATGAMFGLPGAPGPPGPPGQKGE
PGVPGARDWNLDTRDYSNMAVKVTDYIKSHGLLRDVLRDSQRLVQGPPGPPGLPGMPGHS
QWVSSPENVVDVVEYIKSRGVLHDIVRDYSSRAFQGPPGPPGPAGPPGHTRWFGSHGNAT
DLLEYIRSHGLQRDFERNHNERAAQGPPGPPGPPGPPGYSRLFGSHTNVTDLVEFIRAHG
AIVGPPGRPGQKGDMGFAGPKGEKGERGLPGLEGRKGQKGDRGEFTLTTTRRRRDVGV
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaattacagctcagactgacagctccgggggaagtgctggaggaagtagc
agaggggatctgtccctgagtgcaggagggtcaggtgagacagctgcatcaggaggctct
ggcggcacaagcagctcagttctgatcacatccagcagctccggtggctctggaggctcc
ggagccagcaagggcaccggaggcatcagcatcacttctctaggagcttcctctgccata
tcctcagggggcgggggttcagcagcctcagggggttcaggggctggggcagggttaaag
gctgctaaaggcaaaagggaagggggtctaggtgctgtgacagtctcaacagtgacaaag
accggttacggttcagaaggatctggggaggcaaagagaggctcgtcctcagcggtcact
tactcacctgttccaaaggagaggaagaatatgaccaccatggcaacagctctctcagat
gtctttgacgagagttcaagcacaaactcctctccagagtacaacaggaaggagtacggt
atttcaagttctgtctccagagggagaactcagagcagagagagtcagatcagagccagg
cttcagagtgcctctcctcccgcaagctggacggagctggacgacgtgaagcgtctgctg
agaggaaacaactcccccagcaccagccccactcagtcccccaacaacacgctgcccatc
cccaagaaggccagtatggaaactaggaccatgtctgagagctcaactgcagaccactat
ggcagcatttggtctggaggtgtgagcagtggctacagttacaacaccaaccccaacaac
ctgtccacgacctccatcctttacccgtcaggagctcagaacaatctgacactgggctct
ccctccatgagcagtctgtctgtcagcagcactgttcctgtgtatggtgttcagaataac
ctggtcagtaccacccccactgtcctctctcccactgggaccaacgcacagatagtttat
ggtgtgcagaaaaatgcaactagcactgcaatcagtccaatcacagtgagacccagcagt
cccatcagtgacgaggcctcgggcaaagactttaagtttgtgctgatagagaaggagaac
actcctgtgaagaaggacacagaacggctggtcatgaccaaagacacagggaagacattc
ttgtctgctgcacctgttagtgcctctgctgcctactctggggattctctacagagagag
aaacagaagctagcatctaacacaacagaggaaggaacagatgctgcagtcctaaaagtt
gctaccaaagacaaagccacctacgcagagatccgtaaagatgactcaccctttagcttc
tgctcctgctgcagctggtggaaatggctgctgggccttctgctcagcctgctcctcctc
ctcggccttctctttggactcattgctttggctgaagaagtgaaacgccttaagaaccgc
gtcgatgctctcgaggccatcaccagcactacctcagccaggtccagccgattgtcagcc
tcctccactggtgttaacatcatcgacccgctggactcggcgtacattgacaggagttcg
gctggatccgccctgaccccctccgacaatgggatctacctgggggctgctgggccaggg
ggaggcgcagggacagaaccaggacaggacagcgctgccttgcagagagctgttcagcag
ctggtcagggctgaactccgctcgagtgctctcagagaaacacttgcacactcactaaaa
ggggaaagaggagatccaggacctaaaggtgatcaggggctgctgggacaaaaaggtgat
agtggattccctggtatgccaggccttcctggtccgatgggtcacccaggattggatgga
ccaaggggactaaaaggaaatgcaggtgaaccaggcccagagggaccagcaggccagagg
ggccgggacggaccgatgggcccccgaggagaggctggagcaccaggttttggagagaaa
ggagacaaaggatctcaaggcgaggcaggacatcctggtcctgctggcactcctggacct
gtggggccgaaaggtgccatgggagatcaaggtgccacaggaagccctggtgctccgggt
ccaatgggtctccaaggtgaagcaggagctccaggaacaaaaggtgatcgaggaacacca
gggctgtcagggatcaaaggagatcagggagagaggggatcacgcggcccagcaggtgaa
ccaggacaacctggaccacaaggccctgcagggccaagaggatctaaaggaactacaggt
gacacaggtttgatgggacttcccggggtgagaggatcacctggaattcctggagatgtt
gggcccccaggtgaaccaggaccacctggtaaagtcatcgctccaattggctccaacact
gtggccatccctggaccaccaggacctgctgggcctccaggtcctgctggaacccatggt
ctctctggtccagtgggcccacctgggatcccaggacaacccggacctcagggagaacga
ggagagaaaggagaaaagggagatcaaggaaaacctggcgagcctagtagtgtcataact
tcagaaactgtcagttccacccgaagagacagactttcatcagtggctccactgcctggc
ccaccaggacctccaggtcctcctggagcacctggtcctcaaggtcctcctggtgaggct
aaacagggtcctccaggacgaagaggtcctgtgggagagccaggaattggtttacctgga
cctccaggagagaaaggagagcctggcagctttgtgcctacatcagaaaccttttttgct
ggcccaccaggaccagcaggacccccaggcccacagggctcaccaggtgaccgaggacta
caagggtaccaaggtgaaccaggtcaaccaggtcttccagggagaccaggggaaccaagc
actggtttcccgggtcaccctggacctagggggcctccgggtctaccaggtccagaggga
ccagaagggccagatgggccaccaggcccagagggaccagaggggccagaggggccacaa
ggacctaaaggtgatgcaggaatacctggtgccttgggaatccccagggcctctagtggt
ggctcattcagtcatggcgccccaggaccacctggaccacctggcccacctggtcctcca
ggaagagatggaagtggatcaggatcaactgatgtgagccagcacattgcagagtacctt
cagagtggtggcatcagacaatacctggctggacctcctggacctcctgggcctccaggg
cttccaggagccccaggggccctagggcccgcaggggacaggctggtagatgatgtggcc
aaccgtgttatcagctacatccaggctccaggtagagaacaagagagagacaggattcct
ggccctcctggtcctccaggtgcacctggctccatctctgtcaatgacatcatcagtcta
ttacagcgagaggatgtaaggagacacatcggtggtactcccggtccaccaggacctcct
ggagctccaggccttggcagctccagattcaatacccaggaagtagctgaacgtgttctt
gctctcatgaatgagaagggggtggtaggtccccctggtccccctggatctcctggactc
cctggactccctggaaatgtgttatcaactgagcatcaagcacttgtgggtcctcagggg
ccccctggttcccctggtatccctggtccacaaggtccacctggaccagcaggtccccct
ggaccagcaggtccactgagtccaacaggatttgggaactacatcactccagaaattcat
gactatcttcagagtgttgcctttagaggcctaccaggcctccctggcccccctggcccc
cctggccctgaaggcccccctggtcaagtccacgggctggtttcctatgctgagcatgcc
aacagagagacgcttaaagcagaacaacagcaataccttaatggtgacagagcgacagga
gcaatgtttggacttcctggtgctccaggccctcctggacccccaggacaaaagggagag
ccaggtgtacctggtgccagggactggaacctggatactagagactactccaatatggct
gtcaaagtaactgattacattaaatcccatggtctgctgcgtgatgttttgagagactct
caacgtcttgttcaaggacctccagggcctccaggacttccaggaatgcctggacacagc
caatgggttagttccccggaaaacgttgtggacgtggttgaatacatcaaatcccgtggt
gtgttgcacgacatcgtaagggattacagcagtcgtgccttccaaggacctccaggacca
cccggccctgctggcccccctggacatactcggtggtttggttcccatggaaacgccaca
gatctgttggaatacatcagatctcatggtctgcaacgtgactttgaacgtaaccacaat
gaacgagccgcccaaggaccaccgggaccacctggccccccaggtccccctggatacagc
cgattgtttggctcccacacaaatgtcactgatctagtggaattcatcagagcacatgga
gccattgtaggaccacctgggagaccaggacagaaaggggacatgggattcgcagggcca
aagggagagaaaggtgaacgaggccttcctggtttagagggacgcaagggacaaaaaggt
gacagaggagaattcactctgacaactacaagaaggaggagggacgtcggtgtgtaa
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integrated database retrieval system
