Epinephelus fuscoguttatus (brown-marbled grouper): 125884749
Help
Entry
125884749 CDS
T08419
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
efo04147
]
125884749
00535 Proteoglycans [BR:
efo00535
]
125884749
00536 Glycosaminoglycan binding proteins [BR:
efo00536
]
125884749
Exosome [BR:
efo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125884749
Proteoglycans [BR:
efo00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125884749
Glycosaminoglycan binding proteins [BR:
efo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125884749
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
125884749
NCBI-ProteinID:
XP_049425863
LinkDB
All DBs
Position
LG24:complement(4916713..4981315)
Genome browser
AA seq
1498 aa
AA seq
DB search
MLRLQTWLLLLVLCAGSLDAWLWFALPETTTEAPVQMNVTGTTPAATTGANMTVNGTQAK
EEEEDDNLSGAGEEIITVATGTRKSVEAWDVTPTARTTTNGGLTEKVESANPNMTEESGV
SLLQLIGDPPPNEISRVYGPRGETAYTFTPAAVSGQPAVAHVPNPFHRHFSLLFHVKPST
PAASVLFSITDGHQKFMYIGVKLSAVQSGRQKVQFFYTEPDSEASYEAASFVVPSMVDTW
SRFSLSVFDEQVTFYQGCDSEPQVVKFERSPDPMELDPGAGIFVGQAGGADTDKFQGEIA
DLRVVGNPRAAERLCDDEDDSDAASGDFGSGEGDRRQSGHSGHTVKTTPASFRPVPEPPL
IPSHGTTVKETGPGGAKGEKGDRGVKGSKGDIGPAGPKGDSGSSSGSSGSSSQGGERGQK
GEKGAKGNSGFGYSGNKGERGPPGPPGPPGPAGPAAEVVRLGDGSVVQQVSGPPGPPGAE
GPAGPRGGDGEPGDPGEDGKAGPAGPQGVPGTPGAAGAKGQKGEPGEGQPGPRGPPGLPG
PPGPGTGDRPTFVDMEGSGFPDLEKLRGLRGPPGLPGPPGPPGLPGTSVALGPNGPVAFG
PPGPPGQDGAPGLPGPPGPPGRPGQPGIGGVKGDSGELGLPGAAGEKQSSQDSNFFTGLF
SYFAPSSTGAQGDLGLPGTPGQTGLAGLPGPMGPVGPPGPPGPPGPPYRAGDLDGYEGNN
GYSGLPGPPGPQGPPGIPGLPGRPGLPGTHGDKGAEGPRGPPGMPGLDGFTGQPGEKGGR
GEKGEMGPPGRDGGLPGPPGPPGPPGQVIQTSDYNDVYWNEGWQGGHGVPGRAGFPGPSG
PKGEKGSPGPPGYAPKGQKGEPGIIMGPDGRPQYLGGLAGRPGDSGPPGPVGPPGPHGPA
GQKGEIGFPGRPGRPGLNGARGEKGDSGGLGAGSAYPGPPGPPGPPGPPGPSIPYDRIRS
FEDYARYFPAVKGEKGDPGPPGTVDISGAGPNVDIYTLRNELKGERGDVGLKGEKGEPGG
GYYDPRYGGSGVGAPGAPGPPGPRGDSIIGPPGPQGPPGPPGRGYDGQPGPPGPPGPPGG
SFSGANRGTQTINIPGPPGPPGPPGQPGHSSGVTVLRSYDTMTATARRQPEGSLVYIIDQ
TDLYLRVRDGVRQVQLGNYIALPPEDGNEVAAVEPPPVVPYSPDHHSHVDTSSHDSQTPP
ESPVHPGSEHHTHLDHHHTTHTDPRYPSIPEPRYPSNPDPRYPTHHDPRYHPDTRYQPDP
RYPAPTDPRFPSYSDRLNQPDGRTTVHSPYERPGYSDTRYPVTPQRRPPPPVPQTPVHHH
RSGPGLHLMALNSPQTGAMRGIRGADFMCFTQAQAIGMKGTFRAFLSARLQDLHSIVRKV
DRDRLPIVNLKDEVLFDSWDAIFNNGRIKDNVPIYSFDGKDVLSDNTWPEKMMWHGSTSA
GQGHVDSFCETWRVGDQALTGMASSLQSGSLLQQSSSSCSSSYIVLCIENSYASHAKR
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggctccagacgtggttgcttctcctggtcctctgtgcggggagcttggatgcc
tggttgtggtttgcactcccagagaccaccacagaggccccagtgcagatgaacgtaacg
gggacgacgccagcagcaacgacaggtgccaacatgacagtcaatggcacacaggcgaag
gaagaggaggaggatgacaacttatccggggctggggaagaaatcatcaccgtggccaca
ggaacccgtaagtctgtcgaggcgtgggacgtgaccccgaccgccaggactactactaac
ggaggcctgacagagaaggtggagagcgctaaccctaacatgacggaggagagcggcgtc
tctttgctccagctaatcggagaccctccaccgaatgagatcagcagggtctacgggccg
aggggggagaccgcctacaccttcacccctgcagcggtgtcaggccagccggctgtggcc
catgtccccaaccctttccaccgccatttctccctcctcttccacgtgaagccctccact
cccgccgcctccgtcctcttctccatcaccgacgggcaccagaagttcatgtacatcggc
gtgaagctgagcgcagtgcagtccggccgccagaaggtgcagttcttctacacggagccc
gactccgaggcttcatacgaggcggctagcttcgtcgtgccgagcatggtggacacgtgg
agtcgcttctcgctgtctgtcttcgacgagcaggtgactttctaccagggctgcgactcg
gagccgcaggtggtgaagtttgagcggtcgccggatcccatggagctggacccgggggcg
gggatctttgtgggccaggcaggaggagctgacaccgacaagttccagggtgagattgca
gatctgagggtggtgggaaaccctcgggcagctgagcgcctgtgtgacgacgaggacgac
tcagacgctgcctctggtgactttggcagcggcgaaggcgacaggagacaatcaggacac
tctggacacactgtgaagaccacacctgcctccttccggccagtccctgaaccccctctg
attccctcacatggaaccaccgtcaaagaaacaggtcccggcggtgcgaaaggggagaaa
ggtgacagaggagtgaaaggatcgaagggggacatcggccccgcaggaccgaagggagac
tcaggctccagctcgggctcctctggctcctcctctcagggcggagagcgaggacagaag
ggagaaaaaggtgcaaagggtaactctggcttcggatactccggcaataaaggggagcgt
gggcctccgggccctccagggcctccagggcctgccggacctgcagccgaggtggttcga
ctcggggacggctctgttgtgcagcaggtgtctggaccgccgggaccaccaggggcagag
ggacccgcaggaccccgaggaggagatggagagcctggtgacccaggagaggatggaaaa
gctggtcccgctgggccacaaggtgtcccaggaactccaggagctgctggtgccaaaggc
caaaagggtgagcctggagagggtcagccaggacccagaggccccccgggtctcccagga
cctcctggacccggcactggagaccgtcccacatttgtggacatggagggctcaggattc
cccgacttggagaaactgcgggggctccgtggtcctccaggcctgccaggccctcctggc
cctcctgggctccctgggacttcagtggcgctggggccaaacggtccagtagctttcgga
cctcctggaccacctggacaggatggagctcctggtctacctggccctcctggtccccct
ggtagacccggtcaaccaggaatcggaggcgtgaagggtgactccggtgagctcggtctt
ccaggtgcggctggagagaagcaaagctcgcaagactccaactttttcacgggcctgttt
tcttactttgctccatcctctacgggtgctcagggtgacctcggactgccaggtacacca
ggacagactgggctggcagggcttccaggtccaatgggaccagttggacctccaggacct
cctgggccaccggggccaccgtaccgtgctggtgacctggatggatatgagggcaacaat
ggctactctggtctccctggcccacctggaccacagggtccacctggtattccaggtctg
cctggtcggccaggtctgccgggtactcacggagacaaaggagcagagggaccaagagga
cctcctgggatgccaggtctggacgggttcacaggacagccgggtgaaaaaggaggcaga
ggagagaaaggagagatgggtcctccagggcgagatggcgggctacctggccctccaggg
cctcccggacctccaggacaagtcatccaaaccagtgattataatgacgtatattggaac
gaagggtggcagggaggacatggtgtcccgggccgagcaggattcccagggccctcagga
ccaaaaggagaaaaaggatcccccggtcctccaggatacgcacctaaagggcagaaagga
gagcctggtatcatcatgggacccgatgggagacctcagtacctcggcggtctggcagga
cggccgggtgacagtggaccccccggccctgtgggacctccaggtccacatggtcctgca
ggccagaagggagagattgggttcccaggtagaccgggtcggccggggctgaacggcgcc
agaggagagaagggagactcaggaggcttgggagctggatctgcttaccctggtcctcca
ggtccaccgggacccccaggacctcctggaccgtcaattccctacgacagaatcagatca
tttgaggattacgccagatacttcccagctgttaaaggagagaaaggcgatccaggccca
ccagggacagttgatatttcaggtgccgggccaaacgttgacatttacactttaaggaat
gagttgaaaggtgaaagaggcgatgtcggcctgaagggagagaaaggagaaccaggtgga
ggatattatgacccccgctatggaggcagcggcgtcggagccccgggagcgcctggacct
cctggtcctagaggcgactcaatcatcggcccaccaggccctcaggggccaccaggtcca
ccaggaagaggctacgatgggcaacctggaccaccagggccgcccggacctccaggagga
tccttttctggtgctaacaggggcacacagactatcaatattcctggaccaccgggacca
cctggacctcctggacaacctggacactcctcaggggtgacagtgttgaggtcgtatgac
accatgacagccaccgctagacgacagcctgagggctctctggtttacatcatagaccaa
actgatctctacttacgggtcagagatggagttcgtcaagttcagctcgggaactacatt
gctttgccccctgaggatggtaacgaggttgcagctgtggagcccccgccagttgtcccc
tactccccagaccaccactcgcacgtcgacacctcctcacacgactcccagacgccacct
gagagtccggttcaccccggctctgaacatcacacacacctagaccaccaccatacaaca
cacactgaccctcgctacccatcgatccctgaacctcgatacccatcgaaccctgatcct
cgatacccaacccaccatgatcccagataccaccccgatacacgataccagccggatcct
cggtacccagcacccacagatccccgctttccaagttactcagaccgtttaaatcaacca
gatggtaggactactgtacattcaccctacgagcgccctgggtattcggacactcgctat
ccagtcactcctcagcgacgaccacctcctcctgtaccccagactccagtccaccatcat
agatcaggtccagggctccacctcatggccctgaacagccctcagactggcgcgatgcgg
ggcatccgcggtgcagacttcatgtgcttcactcaggctcaggccatcgggatgaaggga
actttccgagccttcctgtccgccagactccaggatctccacagcatcgtccgcaaggtc
gacagggaccgtttgccaatagtcaacctgaaggatgaggttctgtttgacagctgggac
gccatcttcaacaatggcagaataaaggacaacgtcccaatctactcctttgatggcaaa
gatgttctcagtgacaacacatggccggagaagatgatgtggcacgggtcaaccagcgcc
gggcaggggcacgtcgacagcttctgtgagacgtggcgtgtaggtgaccaggcgctgacc
ggcatggcatcgtcgctacagagcggcagtctgctccagcagagctccagcagctgctcc
agctcctacatcgtgctgtgcatcgagaacagctacgccagccacgccaaaagatag
DBGET
integrated database retrieval system
