Epinephelus fuscoguttatus (brown-marbled grouper): 125884812
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Entry
125884812 CDS
T08419
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125884812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
efo03041
]
125884812
03009 Ribosome biogenesis [BR:
efo03009
]
125884812
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125884812
Spliceosome [BR:
efo03041
]
Complex A
U1 snRNP components
U1 related factors
125884812
Complex B
125884812
Ribosome biogenesis [BR:
efo03009
]
Eukaryotic type
Pre-60S particles
Helicases
125884812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
125884812
NCBI-ProteinID:
XP_049426012
LinkDB
All DBs
Position
LG3:35156210..35164850
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AA seq
634 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGNRGGPPPGKFGNPGERLRKKHWNLDELPKFQK
NFYQEHPDATRRPLQEIEQYRRSKEVTVKGRDCPKPIVKFHEAAFPSYVMEVIVKQNWTE
PTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YIQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINY
DYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAE
DRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSSYRDRDSDRGFGSGPKSAFGGNKVQNGG
SYGGNSGNSSGSYGNNNYSNSNGQGNFGAPANQVGAFGNQSFQGPPQFGAMQRAAQNGMN
HPPFPFNSQPPPQAQQPPPPPPMVPYPMPPPFPQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttcggacagagatcgcggcagagacagagggtatggtggaggacctcct
cgctttggtggtggcggaggaggcaataggggcggacctcctccaggcaagtttggcaac
cctggtgagaggctgcggaaaaagcactggaaccttgacgagcttccaaagtttcaaaag
aacttctaccaggaacatcctgatgccacacgcagaccacttcaagagattgaacagtat
cgaagaagcaaagaagttacagtcaaaggcagagattgcccaaaaccaattgtaaaattc
catgaagctgcatttccaagctacgtcatggaagttattgttaaacagaactggactgag
ccaactccgattcagtctcaggggtggccagttgccctgagtggcaaagacatggttgga
atcgctcagactgggtctgggaaaacccttgcttaccttctgcctgcaattgtgcacatc
caacatcagccattcttggagcatggagatggacctatttgcttggtgctggcgccaacc
cgtgagctggctcagcaggtgcaacaagtggctgctgaatatggcagggcctcccgtctc
aaaagcacctgcatctatggtggtgcgcccaaaggaccccaaatcagggaccttgagagg
ggtgttgagatttgcattgctaccccaggtcgtctcattgacttcctagagtgtggtaag
accaatttacgtcgttgcacctatctggtgctggatgaagctgaccgcatgctggacatg
ggatttgaacctcagatccgcaaaatagtggaacaaattcggccagaccgtcagaccctg
atgtggagtgccacctggcctaaggaagttcgccagctggctgaggacttcctgaaggac
tacatccagatcaacattggtgcactgcagctcagtgccaaccacaatatcctgcagata
gttgatgtttgcaatgacatggagaaggaggacaaactgatccgtttgctggaggagata
atgagcgaaaaggagaacaagactattatttttgtggagaccaaaaggcgttgtgatgag
ctcaccaggaggatgagaagagatgggtggccagcaatgggaattcatggagacaagagt
cagcaggagagggactgggtccttaatgagttcagatacggcaaagctccaatcctcatc
gctacagatgtggcttcccgtggcttggatgtggaggatgtgaaatttgtcatcaattat
gactaccctaactcctccgaggattatatccatcgcattggacgcacagcccgaagtcaa
aaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaggccagtgacctg
atctctgtgctccgcgaggccaaccaggccattaaccccaagctgatccagatggctgag
gacagaggaggtcgtggaagggggggaagaggtggctacaaggatgaccgtcgggatagg
tattccgggggtgggaggagcaactttggtggtagtagctacagggacagggacagtgat
agggggtttggcagtgggccgaagagtgcctttggtggcaataaggtccaaaatggtggc
agctatgggggcaacagtggtaactcaagtggtagctatggcaacaacaattatagcaac
agcaatggacagggtaattttggtgctccagcaaaccaggtgggtgcctttggtaaccaa
agcttccagggcccccctcagtttggggccatgcaaagagccgctcagaatggcatgaac
catccaccattcccattcaactctcaaccaccaccacaggcccaacagccaccaccccca
ccaccaatggtgccctaccccatgccaccacccttcccacagtag
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