Epinephelus fuscoguttatus (brown-marbled grouper): 125885078
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Entry
125885078 CDS
T08419
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125885078 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efo03019
]
125885078 (patl1)
Messenger RNA biogenesis [BR:
efo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125885078 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
125885078 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
125885078
NCBI-ProteinID:
XP_049426469
LinkDB
All DBs
Position
LG3:13848550..13864458
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AA seq
836 aa
AA seq
DB search
MFRFQSLDEDCTLEEEDEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGL
GAGLGLGGGVMGGESDLGGAEDPSSTHVPSSVGHVPHPSSLPTLKFSLSSSRLPPSDVED
RGGGGDLAESLARLILEADPAIAGVGAAERPGPSPGSSGTSLSALQGLDRPRVLPQPSSI
PHPTQPHQHPQHPQHQLPPGHSTSGLSPGPPPSSMLSYQQQQHLLRRGTAPMAQMNSHSI
WENSMGFGPVSVTPGLVTHMEDSPLMSIIKEVGLPKRPPQGRNDEGRDLSERVPPPRSSS
PVIGSPPVRAVPIGTPPKQPMSHALNHQIHHPTAVHVRAPVQHRYPPPFPERVSPNTLLN
IANSPLCRGPFPPGVGPVLSQIQRAQLLNSQVAGFPRGGPAPPLLPGGGGFRPFFGGPPP
PLGHRMGLPPPHGPPNHTPPIRHNTTHLHPQHRRMLTQRMQNRGGDRGRTGGDRRSRDPY
SNLMTQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEHTTKLIT
PQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQIL
YTVEKMYSLLLEVQDFEKRFVLAPEEDREALLEQHKINTVQLCNSLREKEWDDRVSDEQC
VMIMSVRKGKRLISRLLPFLPSAQAVAVVMAISRNLPALAKKDKQDQVLCWLVEPVSAVI
QALSSSALTDLLQELQGNEGQLATVLHNKFGVTLLYLILSEGERMQSTDPNCQLMDDNRW
TELVFSVTRELLSVPTSSLSPPLFTPPNLLSLFSRYVDRQRLELLQDKLQISALSR
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgaagactgtacgttggaggaggaagacgaggggctc
gtagaggaggaagatgaaattgatcagttcaatgacgacacctttggagccggggccatc
gatgacgactggcaggaggaacacaaacgccttgctgagctcgatgagagggacgggctc
ggagcagggttggggttaggaggaggggtgatgggaggagaatccgatttaggaggagct
gaagacccgtcctccacccatgtcccttcttctgtgggccatgttccccatccatcttcc
ctccctaccctcaaattctccttgtcttcctccagactgcctccatcagatgtggaggac
cgaggagggggaggtgacctggccgagtctctggccagactcatcctggaggctgacccg
gccatcgctggggtcggagcggctgagagacctggtccatcccctggctcttcaggaacc
agcttgtctgctctgcagggcctggaccgacccagagtcctgccccagccttcctccatc
ccacaccccactcagccgcaccagcatccccaacacccccagcaccagctgcctcctggg
cactccacctcaggcctttctcctggccctcctccatcgtccatgctcagctaccaacag
cagcagcacttgctgcgcagagggactgctcccatggcccagatgaactctcacagtatc
tgggagaacagtatgggttttggtccagtcagcgtcacccccggactggtcacacacatg
gaggatagtccactaatgtctataatcaaggaggtgggcctccctaaacgacctcctcag
ggcaggaatgatgaaggacgagatttgtcagagagggtcccacctccgcgctcttcttcc
cccgtgattggctcccctccggtgagggcagtgcccatcgggaccccgcctaaacagcca
atgagccacgccctgaatcatcagatccaccatcccacggcggttcatgtgagagccccg
gtccagcacagataccctcctcctttccctgagcgtgtgtcacccaacaccctcctcaat
atagctaactctcctctgtgtcgtggtccattccctcctggtgttggtcctgtcctgtct
cagattcaacgggcccagctgcttaactctcaggtggctggttttcctcgcggtggtccg
gcgcctcctttgttaccaggtggtggtggtttccggccgttcttcggaggccctcctcct
ccactgggtcacagaatgggcctgccgccccctcatggcccccccaaccacacaccaccc
atccggcacaacaccacccacctccacccccagcaccgccgcatgctcacccagcggatg
cagaaccggggaggggaccgtggcaggactggaggagaccggcgcagcagggacccctac
agtaaccttatgactcagaaagagaaggaatgggtaactaagatccagatgatgcagctg
cagagtactgacccttacctggatgactactactatcagaactactacgaaaagatggag
aagcgtcaggagagagagagagacagcagcaagaaggagcacaccaccaaactgatcact
ccacaggtcgccaaagttgaacacacctacagaccagttcaatttgcaggctctctgggt
aagctgacagtctccagcgttaacaacccccgcaagatgatcgatgctgtggtgacgacg
cgcacagatgacgaggagaaaagagagaagcaggtttggaataagaggcgacagatcctc
tacactgtggagaagatgtacagtttgctgctggaggttcaagactttgagaagcgcttt
gtcctggcgccagaggaggacagggaggctcttctggagcagcataaaatcaacacggtt
cagctgtgcaactctctgcgggagaaggagtgggatgacagagtgagtgatgagcagtgt
gtgatgatcatgtcagtgaggaagggcaagcgactcatctccaggctgctccccttcctg
ccctcagcccaggccgttgccgttgtcatggcgatttcccgcaaccttcctgccctggcc
aagaaggacaagcaggaccaggtgctgtgctggttagttgagccagtttctgcagtgatc
caggcgttgtcgagctccgccctcacagacttgctccaggagcttcagggcaatgagggc
caactggccacagtactgcacaacaagtttggtgtgacactgctgtatctgatcctgagt
gaaggagagaggatgcaaagcaccgatcccaactgtcaactcatggatgacaatcgatgg
actgagttggtgttttcagtaacgagggagttgctcagcgtccccacctcatccctgtct
cctccccttttcacccctcctaacctgctctccctcttctcacgctacgtcgatcggcag
aggctggagctgttacaggacaagctacagatctctgctttgtccaggtag
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