Epinephelus fuscoguttatus (brown-marbled grouper): 125885679
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Entry
125885679 CDS
T08419
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125885679 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efo03019
]
125885679 (parn)
Enzymes [BR:
efo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125885679 (parn)
Messenger RNA biogenesis [BR:
efo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125885679 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
125885679
NCBI-ProteinID:
XP_049427331
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All DBs
Position
LG3:28405598..28417445
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AA seq
682 aa
AA seq
DB search
MEVTRQNYKDSLNTVYSAIDEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFKYDQTKSKYITKPFNFYIFPKPFNRTSPDVKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEEEAQLREQTEERRNQHANGVGTPSYISPSSSKGPAHVPEEHKD
FINRVIEKVEALFSNSEKTLDLEPCTGFQRKLIYQTLNWKFPKGLHVETVETDKKERYIQ
VSKVDEEERKRREQQKQEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLPDFKEVTMCVFPRLLDTKLMASTQPFKEMITNTSLAELEKQLKESPFKSPQV
ETAEGFPSYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISARSKLIEPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGKQQDKEKLGQTPKSWGEDGWVKPHY
TSATAAGFGYPRGLRKRSISPVQGEQGLGDTPVTDGWSHYSYPDSTGSKKMKTDDKSGQA
NAEAIESKTSEGWLKTAEPSDSSGSSPIPDDERQTPEGSDAEGTVTWQQAPTAHGRKGQK
NKKKKSEGAESTTSLFEVPEVW
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgccagaattataaggacagtttaaacacggtgtacagcgcgatagac
gaggctgacttccttgccatcgatggagaattttcagggataagcgacggtcctaatgtc
agtgcactcaccaacgggctggacacaccggaagagcgatacacaaagcttaaaaagcac
tccatggactttctgctgttccagtttggattatgtacattcaagtacgaccagacaaag
tcaaagtatatcacaaagccttttaatttttatatattcccgaaaccgttcaacaggacg
tccccagacgtaaagttcatctgtcaaagttccagtattgacttcctggccagtcaagga
tttgacttcaacaaggtgttctgtcatggaatcccatacctaaaccaagaggaggaagcc
cagctgagggagcagacagaggagagaagaaatcagcatgctaatggtgtaggaacgcca
tcctacatctcaccatcctcctctaaaggccctgcacatgtccctgaggaacataaagac
ttcatcaacagggtgatagagaaagttgaggccctcttcagtaactcagagaagaccttg
gacttggagccatgcactgggtttcagaggaagctgatataccagacactgaactggaaa
ttccctaaggggctacatgtggaaactgtggaaacagacaagaaggagcgatacatccag
gtcagcaaggtagatgaagaagagaggaagagaagggaacagcagaaacaagagagagag
caggaggagctaaatgatgctgttggcttctccagggtcatccatgccatctctaaatct
ggtaaactcgtggttggtcacaacatgctcttggatgtgatgcacaccatccaccagttc
tactgccctctgccagaggatctcccagactttaaagaggtcacgatgtgtgtcttccca
agacttctggacacaaagctgatggcttccactcagccttttaaggaaatgatcacgaac
acctctctggcagagctggagaaacagctgaaggagagccccttcaagtcaccacaagtt
gaaacggcagaggggttcccgagttatgacacagcccaggagcagctccacgaggccggg
tacgatgcctacatcactggcctctgtttcatctcaatggccaactacctgggctctttc
ttgactccaccaaaagcatacatctctgctcgctccaaactaattgagcctttcttcaac
aagcttttcctgatgaggataatagacattccctacctcaacatcacaggaccagatttg
cagcctaaaagagaccatgtcctgtacgtcaccttcccaaaagagtggaagactagtgac
ctctaccagctcttcagtgcctttggaaacatccaggtttcatggatagatgacacatca
gcatttgtgtccctgagtcagacagaccaggtacagatagctatgaacaccagccgctat
gcagagagttacaggatccagacgtatgcagagtacatccagggtaagcagcaggacaag
gagaagctcggccagacacccaaatcttggggagaggacggctgggtgaaacctcactac
acctctgcgactgctgctggttttggataccccaggggtttgaggaaacgcagcatcagc
cccgttcagggagagcaggggcttggagacactccagttacagacggctggagtcactac
tcatacccggatagcacaggcagcaagaagatgaaaactgatgacaaaagtgggcaggcg
aatgcagaagctattgagagcaagacctcagaaggatggctcaagacggcagagccatca
gattcatcagggtcaagtccaatccctgatgatgagaggcaaactcctgaaggcagtgat
gctgaggggacggtcacctggcaacaagctccgacagcccatgggaggaaaggtcaaaag
aacaagaaaaagaagtctgaaggtgctgaatctacaacgtcactgtttgaggtcccagaa
gtttggtag
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