Epinephelus fuscoguttatus (brown-marbled grouper): 125887076
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Entry
125887076 CDS
T08419
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
efo03009
]
125887076 (ighmbp2)
03012 Translation factors [BR:
efo03012
]
125887076 (ighmbp2)
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125887076 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
125887076 (ighmbp2)
Ribosome biogenesis [BR:
efo03009
]
Eukaryotic type
Other ribosome biogenesis factors
125887076 (ighmbp2)
Translation factors [BR:
efo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125887076 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
DEAD
ResIII
nSTAND3
Viral_helicase1
AAA_16
AAA_22
Helicase_RecD
Flavi_DEAD
UvrD-helicase
IstB_IS21
DnaB_C
ABC_tran
SLFN-g3_helicase
AAA_25
NPHP3_N
PhoH
AAA
AAA_31
ATPase
Zot
SRP54
Motif
Other DBs
NCBI-GeneID:
125887076
NCBI-ProteinID:
XP_049429552
LinkDB
All DBs
Position
LG4:complement(27568976..27579346)
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AA seq
999 aa
AA seq
DB search
MTVEQFVSKTLELLQEEREAEIEETRIWQENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VVILEPRKYLGFSSLPSNNFGPGDIVGLYDTGGCTAASQIGTGIVTRVSQTSVSVAFDDS
KDGLNFDTDALYNLLKLANDVTYKRMKNALNALNGYSNGPAANLINVLFGDAKPSTQSQP
NEVKFFNSNLDDSQRDAVSFTLSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLAQCKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIIADIRKDMDK
AFMGMKKMREKGDRVNYKREIGELRKELKAREATAIAQILKSADVVLSTNTGACHDGPLK
FLPAEHFDWVVIDECAQALESSCWIALLRARKCILAGDYKQLPPTIKSQTAASKGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMDWASKEMYQGKLTAHGSVERHLLKDLPGVACVE
ETSTPLLLIDTAGCGLSEMEVTDEQSKGNQGEVDIVELHIKALTEAGVKAKDIAIIAPYN
LQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHIAVVCDTQTVQNHAFLKSLIDHMTESGEVRTAFEYLQDIVPQNYTRDHKDTKANT
SGSSSTSTKQKVKDQPPNRAKQQQKKKSASSNSNDNTAVTEKNTKSCINTQTEEEKKNRY
AEIRAQVENFLKDSNQSELQFPSSFNSHDRLLVHQIAEELGLMHESKGEGKDRCITVTRP
LVLTPAEEPPQEEEEEEGEEAAQEEETAPSPQTEPVCQPPLDLKSLHLERMKREQQKREE
IAQQKKQQNNIPPVQPQLAKKPKSAKGKSRMKTGACGIAAAATPDDDFDTLINAVVKADS
VCSFVKCKASVLTLGQLCLFCNRQYCLSHHIPEVHGCGDKAKSHARMRISKEGILYAGSG
KKDKSVDPNKKAYLQRKLDSKLKDMASQRKPKKDKDSNS
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgacggttgaacagtttgtgtcaaagactctcgagcttctgcaggaggagagggaggct
gaaatagaggagaccaggatatggcaggagaacatctccctcaaggatcttcaaaataaa
ggagtttgcctgctgaaactgcagataggaagtcagtccacaggcctgtacgggcgtaca
gtcgtcatcctcgagccaagaaagtatcttggtttctcatctctgccaagcaacaatttt
ggacctggggacatagttggcttgtatgacactggcggatgcactgcagcctcacagatc
ggcacaggaatagtgacgagggtcagccaaacttctgtaagtgtggcgtttgatgactca
aaggatggcctcaactttgacacagatgccctttacaacctcttaaagttggcaaatgac
gtcacctacaaacgaatgaaaaatgccttgaatgcattaaatggatacagcaatggacca
gctgccaatctgataaacgttctctttggagacgcaaaaccttcgactcagtcacagccg
aatgaagttaaattctttaactcgaacctggatgattcccagagagatgctgtgtcgttt
actctgtctcagagagaactggctgtgattcatggaccaccaggaacggggaagaccacc
acagtggtggagatcatcctgcaagcagtcaaacaaggccagaaggtcctgtgctgtgca
ccctctaacgtggccgttgataatttagtggagaggttagctcagtgcaaggcaaaggtc
ctgaggctgggtcaccctgccagactgctggagtccatacagaaacattcactggatgcc
atcctcgcgcagagtgacaatgcaaacatcatcgctgacatccgtaaagacatggataaa
gcatttatgggaatgaagaagatgcgtgaaaaaggagaccgggtgaactacaaaagggaa
ataggggagctaagaaaagagctgaaagcaagagaagcaacagccatcgcccagatcctg
aaaagtgctgacgttgtgttatcaaccaacacaggtgcttgtcatgacggccctctgaag
ttcctgccagcagagcattttgattgggtggtgatagacgagtgcgctcaggctctggag
agcagctgctggatcgccctgctcagagcgcgcaagtgcattctggctggagactacaag
cagttgccacctaccatcaaatcacaaacggctgcatcaaaaggcttgtctctcagtctc
atggagagactcatccagatgtacggggactcagtggtgcgaatgctgacagttcagtac
cgcatgaacagtgccatcatggattgggcctccaaagagatgtaccagggaaaactaaca
gctcacggctctgtagagagacacttgttaaaagatctaccaggagtcgcctgtgtcgaa
gagaccagcacaccgcttcttcttatcgacactgcgggctgcggcctgagtgagatggag
gtcacagatgagcagtccaaaggcaatcaaggtgaggtagacattgttgaactgcacata
aaggccttgactgaagctggggtgaaagctaaagacatcgccattattgctccgtacaat
ctacaggtcgatcttctgcgtcagaaactttctgcgagacatccggagctggagataaag
tcagtggatggatttcagggcagagaaaaagaggctgtggtattgtcgttggttcggtcc
aacagaaagggggaagttggatttctggcggaggacagaaggattaatgtggccgtgaca
cgtgcaagacgtcacatcgctgttgtgtgtgacacccaaactgttcagaatcatgctttc
ctgaagtccctgattgaccatatgaccgagtctggcgaggtcagaacggcatttgagtac
ctccaagacatcgtgccccaaaactacacccgcgaccacaaagacacaaaggctaataca
tctggcagcagctccacgtctaccaagcagaaggttaaagatcaaccgccaaacagggcg
aagcagcagcagaagaagaagtcagctagtagcaacagtaatgacaatactgctgttaca
gagaagaacacaaagtcctgcataaacacacaaacagaagaggagaaaaagaacagatat
gccgagatcagagcacaggtggaaaactttctaaaggactcaaatcagagtgaactacag
ttcccatcatcgtttaactctcatgaccgcctgctggtccaccagatcgctgaggagctg
ggcctcatgcatgagagtaaaggcgaggggaaagaccggtgtatcactgtcacaaggccc
ctggtgctgacaccagctgaggagccaccacaagaagaagaagaagaagaaggagaagaa
gcagctcaggaagaagaaacagcccccagtccccaaacagagcctgtgtgtcaacctcca
ttagacctgaaaagtttacatctggagcgaatgaagagggagcagcagaagagggaagaa
attgctcaacaaaagaagcagcagaacaacatcccaccagttcagccccagttagcaaag
aagcccaagtcggctaaaggaaagagccgaatgaagacaggcgcctgtggcatcgccgct
gccgccactccagatgatgactttgacacacttatcaatgctgtcgtgaaggctgacagc
gtgtgcagttttgtcaagtgtaaagcgtcggtgctgacacttggacagctttgcttgttc
tgcaacaggcagtattgtctcagtcatcatataccagaggttcacggctgtggagataaa
gccaagtctcatgcccggatgagaataagcaaagaaggcattctttacgccgggagtggg
aagaaagacaaatccgtggaccccaacaagaaagcctatctccaaaggaaactggactct
aaactgaaagacatggcatcacaaagaaaaccaaaaaaagacaaagacagtaacagttaa
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