Epinephelus fuscoguttatus (brown-marbled grouper): 125888453
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Entry
125888453 CDS
T08419
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125888453 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efo03019
]
125888453 (ddx6)
03036 Chromosome and associated proteins [BR:
efo03036
]
125888453 (ddx6)
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125888453 (ddx6)
Messenger RNA biogenesis [BR:
efo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125888453 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
125888453 (ddx6)
Chromosome and associated proteins [BR:
efo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125888453 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
AAA
Motif
Other DBs
NCBI-GeneID:
125888453
NCBI-ProteinID:
XP_049431794
LinkDB
All DBs
Position
LG5:complement(34121905..34135973)
Genome browser
AA seq
482 aa
AA seq
DB search
MSTARTENPVILGLSNQNGQLRGSVKPAGAPGGGGGGPQQQQLNQMKGTINNGNSQPAPT
TNAVIKPGDDWKKSLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCIQAVVIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVNQVQ
MIVLDEADKLLSQDFVVMMEEMLGFLPKQRQILLYSATFPLSVQKFMNAHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEV
KP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccaggacagagaatccagttattttgggcttgtccaaccagaatgggcag
ctcagaggctcagtaaagcctgccggagcaccaggtggaggtggaggaggccctcaacaa
caacaacttaatcagatgaaaggcacaatcaacaatggcaattcccagccagcccccaca
actaatgctgtcatcaagcctggagatgactggaagaaaagtttgaaattgccccctaaa
gacatgaggatgaaaacttcggatgtgactgcaactaaaggcaatgagtttgaagattac
tgcctaaagagggagctgctcatgggaatctttgagatgggctgggaaaagccctctcca
attcaggaggaaagcattcccattgcactgtcaggaagggatatcttggccagagccaag
aatggcacgggaaagagtggagcctacctcattcccttacttgaacgcattgacctgaag
agggactgcatacaagctgttgtcatagtgcccaccagagaactggctctgcaagtaagc
caaatatgtatccaggtcagcaaacacatgggtggagtgaaggtaatggcaaccacaggt
ggcaccaacctacgtgatgacatcatgagacttgacgaaacggtacatgtaattattgcc
actcctgggagaattttagacctcatcaagaaaggagtggccaaagtcaatcaagtgcag
atgatcgttctggatgaagctgacaaactcctgtctcaggactttgtggttatgatggag
gaaatgctgggcttcctgcccaaacagaggcagattctgctttattctgcaaccttccct
cttagcgtgcagaagtttatgaatgcacacttgcagaaaccctatgagatcaacctgatg
gaagagcttacactgaagggtgtgactcagtattacgcttatgtaactgaaaggcaaaaa
gttcattgccttaacaccttgttctccaggctccagatcaaccagtctattatcttctgc
aactcctctcagagagtggagctccttgccaagaagatctcccagcttggttattcatgt
ttctacattcatgccaagatgagacaggagcatcgcaaccgtgtgttccatgacttcaga
aatggcctctgccggaatctcgtctgcactgacctcttcacaagaggaattgacattcaa
gctgtgaatgttgtgatcaatttcgactttcccaagctgggagaaacgtacctacatcgc
attggtagatctggccgcttcggacacttgggtctcgccatcaacctcatcacgtatgat
gatcgcttcaacctgaaagggattgaggagcagcttggaacagagatcaagcccatccct
ggcatcattgacaagagcctatatgtggcagagtaccacagtgagagtggcgaagaagtc
aagccatga
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